Polistes canadensis: 106793100
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Entry
106793100 CDS
T05611
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pcf
Polistes canadensis
Pathway
pcf03020
RNA polymerase
pcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106793100
09124 Replication and repair
03420 Nucleotide excision repair
106793100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcf03021
]
106793100
03400 DNA repair and recombination proteins [BR:
pcf03400
]
106793100
Enzymes [BR:
pcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106793100
Transcription machinery [BR:
pcf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106793100
DNA repair and recombination proteins [BR:
pcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106793100
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
106793100
NCBI-ProteinID:
XP_014615227
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MATTDSKAPLRTVKRVQFGILSPDEIRRMSVTDSGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKETTDQQAADRKPGHGGCGRYQ
PNLRRSGLDVTAEWKHVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRATLRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLEKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSGEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEDNK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGVGVMGSAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTP
ASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPT
YSPTSPTYSPTSPSYSPSSPQHTATGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSP
TSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPQSPAYETDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggctacgacagactcgaaagcacccttaagaactgtaaaaagagtacaatttggtatt
ctttctccagatgaaattcgtcgaatgtcagttacagattcaggtatacgttttccagaa
actatggaaggtggccgaccaaaacttggtggcctcatggatccaagacaaggggtgatc
gatagaaattctcggtgtcaaacatgtgctggtaatatgacagagtgtccaggtcatttt
ggacatatagatttagctaaacctgtttttcatgttggatttattaccaaaacaataaaa
attcttagatgcgtatgtttttactgttcaaagctacttgttagtccacataatccaaag
attaaagaaatagttatgaaaacaaaaggtcaaccacgcaaacggcttacatttgtatat
gatttatgtaaaagtaaaaatatatgcgaaggaggagatgagatggatattaataaagaa
actactgatcaacaagcagcagatagaaaaccagggcatggaggttgtggtagatatcaa
cctaatttgagaagatctggattagatgtcactgcggagtggaaacatgttaatgaagat
tctcaagagaaaaagattgttcttactgctgaaagagcatgggaaattttgaaacacatc
actgacgaagaatcatttattctcggtatggatcctaaatttgcaagaccagattggatg
gtcgttacggtgttaccagttccacctttatcagtgagaccagctgtcatcatgtatgga
tctgctaaaaatcaagatgacttgacacataaattagcagatataatcaaatcaaataat
gaattattaagaaatgaacaagctggtgcagcagcacatgttatatccgagaatattaag
atgttacaatttcatgtagcaacattagtagataatgatatgcctggtatgccaagagca
atgcaaaaatctggaaagccattgaaggctataaaggcaagattaaaagggaaagaagga
cgaataagaggaaatttgatgggaaagcgtgtagacttttctgcacgtactgttattacc
ccagatccaaacttaagaatcgatcaagtaggcgtacctcgtagcattgctcaaaattta
acatttccagaaattgtaacgcctttcaatattgacaaaatgcaagaattagtaagacgt
ggtaattcacaatatccaggtgcaaagtatatagtcagagataatggagaacgtatagat
ttaagatttcacccaaagccttctgatcttcatttacaatgtggatacagagtagagagg
catatcagagatggagatttagttatttttaatcgacaaccaactctccacaaaatgagt
atgatgggtcatagagttaaggttctcccatggagtactttccgtatgaatcttagctgt
acctcaccatataatgccgattttgacggagatgagatgaatcttcacgttccacaatca
atggaaacgcgtgcggaagtagaaaatatacacgttactcctcgtcaaattattacacca
caagcaaacaaaccagttatgggtattgtacaagatactttaactgctgtgaggaaaatg
accaaaagagacgtttttatagaaaaagaacaaatgatgaatatacttatgtttttacct
agttgggatggaaaaatgccacaaccatgtatattgaaaccgaaacctctttggactgga
aaacaaattttttccttgatcattcctggaaatgtaaatatgattagaacacacagtaca
catccagacgaagaagatgatggaccatacaaatggatttcacctggtgatacaaaagtt
atggtagaacatggagaattagttatgggtattttgtgtaagaaaactttaggtacatca
gcaggatccttacttcatatttgtatgttggaattgggtcacgaagtatgtgggcgtttt
tatggaaatattcaaactgttatcaataattggttattgttagaaggccattcaattggt
attggcgatactattgctgatcctcaaacatatttagaaattcagaaggctattaagaaa
gccaaagaagatgtaatagaagttattcaaaaagctcataatatggaattagaacctact
cctggtaacaccttgagacaaacattcgaaaatcaagtaaacagaattttgaatgacgct
cgtgataaaaccggtggttctgccaaaaaatccttaactgaatataacaatttaaaagct
atggtcgtatcaggttctaaaggatcaaacattaatatttctcaagttattgcttgtgtg
ggacaacaaaacgttgaaggtaaacgaataccttttggttttcgcaaaagaactttacct
cattttatcaaggatgattatggtcctgaatccagaggatttgttgagaattcttaccta
gctggtcttacaccgtctgagttctactttcacgctatgggtggtcgtgaaggtcttatc
gatactgccgtaaaaactgctgaaacaggatacattcaacgtcgtttaataaaggctatg
gagtctgtaatggttcattacgatggaactgtaagaaattcggttgggcaacttattcag
ttgcgttacggagaagatggtttatgtggtgaaacagtcgaatttcaaaatttacctact
attaaacttagtaataaagcatttgaaaagaagtttaaatttgacccaaccaatgaacgg
tatctgagacgcatttttaatgaagatattgtccgtgaaatgatggggtcgggtgaagtc
atttccgaattagaaagagaatgggaacaacttaataaagatagagctactcttcgtgaa
atcttccctagtggagaatctaaagttgtattgccatgcaatttacaaagaatgatttgg
aatgtacaaaaaattttccatatcaacaaaagagctcctacagatctcagtcctatgaga
gttatacaaggtgtaaaagatcttttagagaaatgtataattgtagctggagatgataga
ttaagtaaacaagctaatgaaaatgcaacattgttattccaatgcttagtgagatcaact
ttatgtacaaaatgtgtatctgaggagttccgactttccggtgaagcattcgaatggctt
attggagaaatagaaactagattccaacaagcacaagtatcaccaggtgagatggtaggt
gcgttagctgcgcaatcacttggtgaaccagccactcagatgacactaaacacttttcat
tttgctggagtttcatcgaagaacgtaactcttggtgtacccagattgaaagaaattatt
aacattagtaaaaaaccaaaagcaccttcactaacagtatttttaactggcgctgctgct
agagatgccgaaaaagcgaaaaacgttctatgtcgtctggaacatactacattaagaaaa
gttactgccaatactgcgatctattatgatcctgacccacaaaacactgtcattgctgaa
gatcaagagtttgtcaatgtgtactacgaaatgccggatttcgatccaactaaaatatcc
ccgtggctattacgtatcgaattagatagaaaaaggatgactgataaaaagttaaccatg
gaacagattgcagaaaaaataaatgcaggtttcggtgatgatttaaattgtatatttaat
gatgataatgcggaaaaattggtattacgaattaggattatgaatagtgaagataataag
ttccaagatacagaagaagaaactgtagataaaatggaagatgatatgttccttcgatgt
atcgaagctaatatgcttagtgatatgactttacaaggtatcgaagccattggtaaagtg
tatatgcatttaccacaaactgactcgaaaaaacgtattgttataactgagacaggtgaa
tttaaagcaatagcagaatggttgcttgaaactgacggaacaagtttgatgaaagtttta
agtgaaagggacgttgatccagttcggacatttagtaatgatatttgtgaaattttccaa
gtattaggtatcgaagctgtacgaaaatcagtcgaaaaagaaatgaatgccgtgttacaa
ttctatggtctatacgtaaattatcgacatcttgctttactttgcgacgtaatgactgct
aaaggtcatttaatggctataacacgtcatggaattaatagacaggataccggagcattg
atgagatgttcctttgaagaaacggtcgacgttctgttggacgctgcttcgcatgctgag
gttgatccgatgagaggagtttctgaaaatattattatgggtcaactcccacgtatagga
actggttgcttcgatttactactcgatgcagaaaaatgcaaagctggaattgagatacca
atggcagtaggtgttggtgtaatgggatctgctggtatgttcttcggtagtgttgcaact
ccgagcatgagtcctcaaatgacaccatggatgggcgctactcctggttatggtgcatca
agtatgtcgcctgctcttggcagtggaatgacaccaggaggtgcttgtttctcaccatcg
ggtgcatccgatgcttcagggttatctccagcatattctgcttattctccacaaccagga
agccctggaagtccaggaccaagtatgagtccttatccaatgtcaccagccggtggtgct
tcaccaagttactcgcctacatcaccagcttacttgccaacatcaccaagtatgacacca
tcaagtccaaattattcgccaaccagtccaacatattcgccaactagtccaaactactcg
cctacgtcaccgagttattcgccaaccagtccaagttattcgccaaccagtccaagttat
tcgccaacgagtccaagttactcgccgacttcgccgagctattcaccaacaagtccaagc
tattctccaacgagtccaagttactcaccgacaagtccaagctattctccaacttcgccg
agttattcaccaacgagtccaagttactcgccaacgagtccaagttattctccaacgagt
ccaagttattcaccaacgagtccaagctattcaccaacaagtccaagctactctccaact
tcaccaagttattcaccaactagtcctagttattcacctagttcacctaattacacacca
gcctctccgtcttattcgcccaccagtccaagttattcaccgagttcacctcaatattca
ccagctagtccaagctattcacctagcagtccaaaatattcaccaacgagtccaagttac
tcgcctacttcaccttcatttgctggaacctcgccacaatatactccagcgagtccaaca
tattctccaacaagtccaacttattctccgactagtccatcttattctccaagttctcca
cagcacacagctactggtagtacaagatattctcctagcagtccaaattactcgccaacg
agtcctacgtattcgccaacgagtcctcaatattcaccatcgagtacgaaatattctcct
acaagtcctacttacactccgacgagtcctagttattcgccgacaagtccaacttactct
cctccggtacctggttactctcctacgagtccaacttattcgccgcaatcacctgcttac
gaaacggacgattaa
DBGET
integrated database retrieval system
