Pochonia chlamydosporia: VFPPC_08369
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Entry
VFPPC_08369 CDS
T09407
Name
(RefSeq) DNA-directed RNA polymerase III largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03020
RNA polymerase
pchm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VFPPC_08369
09124 Replication and repair
03420 Nucleotide excision repair
VFPPC_08369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_08369
03400 DNA repair and recombination proteins [BR:
pchm03400
]
VFPPC_08369
Enzymes [BR:
pchm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VFPPC_08369
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
VFPPC_08369
DNA repair and recombination proteins [BR:
pchm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
VFPPC_08369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
MafB
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
28851084
NCBI-ProteinID:
XP_018143947
UniProt:
A0A179FNQ4
LinkDB
All DBs
Position
4:complement(3153242..3158654)
Genome browser
AA seq
1755 aa
AA seq
DB search
MANYHPPFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLL
GSIDRGFKCKTCTQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTS
DPEFVTAINTRDAKLRFNRVWAVCKKKRRCENEDRSEKNDEEFAPGMKPVVNNHGGCGNV
QPQVRQAALQLKAAFDVAQEDGPKRRETVPITPEMAHGILRRISEEDLRHMGLNSDYARP
EWLILTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHI
ARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS
ARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPGAKYVIRA
DGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF
RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMGIVQDSL
AGVYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVIPPEISL
HAPEDKSNIPLKDTGVLIQSGELLYGLLKKKNVGSAAGGIVHLCYNELGPEGAMAFLNGV
QQVVTYWLLNTGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAEATANELEALPGMN
VRATFENKVSMALNSARDQAGTTTQQSLKDSNNAVTMADSGSKGSSINISQMTALVGQQI
VEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV
KTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGEDGLDAMCIESQKLGILQMS
DVAFEDKYRLDLANPPEWFKKDYEYGNELAGDKESMDLLDSEWETLLSDRQTVRLINKSK
MGEEKMQLPLNIGRMIETAKRVFNVRATDRSNLRPADVITRVQNLLSELRIVRGLDPISK
EADLNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRWDRSFVSPGEMVGVLA
AQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKTPSMAVYLNTHLGTQE
QAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTTIAEDMDMVESYFLIPDDGQDNTDQQSR
WLLRITLDRQKLLDKEIRIDDVAQRIKEEYPNDLAVIFSDNNADEQVIRIRTVRQSEEKD
EDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLVVDKDGSELAKKDDERC
TQWYLDTSGSALRDVLAVEGVDATRTYTNDLWQIVEVFGIEAARAALVKELTNVLAFDGS
YVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEETVEILLEAAATGELDDC
RGISENVMLGQLAPMGTGNFDVFLDPKMLETVISDNSRMGLMPGMPVKEGEAEGAATPYD
TGSPMSNDSGYMSMNSPAAGNFSPIQGAGSETPAGFGTEYGGQGFGNMGSMSPYSRGATS
PFSTSPTSPFSSGMVGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPML
RPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHG
AAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGP
GNSGNQYSPNSPAND
NT seq
5268 nt
NT seq
+upstream
nt +downstream
nt
atggcgaactatcatcccccattctccagcgcgccgctgaagacggtcgaggagattcaa
tttggtttgatgtctccagaggagatcaagaacatgagcgtttgccacatcttgtacccg
gagacgatggacgagagccgcacaaaaccacgcgacggtggactcaacgaccctcttctc
ggatccatcgatcgtgggttcaagtgcaagacttgtacacaatcgatgagtgactgccca
ggtcactttggtcacatcgagctggccaaacccgtttaccatcctggcttcatcaagaag
gtcaagaagattttggagattgtctgccacaattgcagcaaggtgttggccgatactagc
gatcccgagtttgtcaccgcaatcaacacacgagatgctaagcttcgcttcaaccgtgtt
tgggccgtttgcaagaagaagcggaggtgtgaaaacgaagatcgtagcgagaagaacgac
gaggaatttgctcctggtatgaagccagttgtaaacaaccacggtggctgtggaaacgtg
caaccacaagtccgacaagctgctttgcaactcaaggctgcttttgatgttgcccaagag
gatggccccaagaggcgagagacggtaccgatcaccccggagatggctcacggtattctg
aggagaatctccgaggaagacctgcgccatatgggcctgaactcagattacgcccgccca
gagtggctcatacttactgtgcttcctgttcccccgcctccagttcgtccaagtatttcc
atggacggtactggtaccggcatgcgaaatgaagacgatttgacttacaagctgggtgat
atcatccgtgccaacggcaatgtgaagcaggctattcgtgaaggatcgccccaacacatt
gctcgagatttcgaggagttgcttcagtaccatgtggcaacatacatggataacgatatt
gctggccaaccgcgcgccttgcaaaagagtggccggcctgtcaaggccatcagagccaga
ttaaagggtaaagaaggccggctcagaggcaacttgatgggcaagcgagtcgatttctcc
gctcgtactgtcatcactggtgatgccaacttgtctcttcacgaggttggcgttcctcgc
agtattgcaagaaccctcacatacccagaaacagtcacgccctacaacattggcaagctg
catcagctcgtcgaaaacggaccgaacgaacatcctggtgccaaatacgtcatcagagcc
gatggtactagaatcgatttgcgacatcatcgacgagccgctcagatttccctggaatat
ggctggaaggttgagcgccacttgatggatggtgactacatcattttcaaccgtcagcct
tcgctgcacaaggagtctatgatgggtcaccgagttcgagtcatgccttactccacattc
cgtttgaacttgtctgttacttcgccgtacaacgctgattttgacggtgacgaaatgaac
ttgcacgttcctcaaaccgaggagacgcgtgcagaggtcaaggagctgtgtcttgtgcct
aacaacattgtgtcccctcaaaagaacggtccgttgatgggtatcgtccaggactctctt
gctggagtctacaaactttgcagacgagacaccttcatcgacaaagaaatggtcatgaac
atgatgctctgggttcccaactgggatggtgttattccccaaccagctatcctcaagcct
cgacctcgttggacgggaaagcagctcatcagcatggtcatcccacccgagattagtctg
cacgcgcctgaagacaagtctaacatccctctgaaggacactggtgtcctcatccagagc
ggtgagcttctctacggtctgttgaagaaaaagaatgttggctcggcggctggcggtatt
gtccacctgtgttacaacgagcttggccccgaaggcgccatggctttcttgaacggtgtc
caacaagtggtcacatactggcttctgaacactggccacagtattggtatcggtgatacg
gttccagacaagcaaactattgaaaaggtccaggttcatattgacacgcaaaaggctgaa
gttgcaagacttacagccgaagccacagcgaacgagcttgaagcccttccaggtatgaat
gtccgagctacatttgagaacaaggtctccatggctctcaactcggctcgtgaccaggcc
ggtaccaccacgcaacagagtttgaaggactcaaacaatgcggtaaccatggctgattcc
ggttccaagggatcttccattaacatttcacaaatgactgctcttgtcggtcaacaaatt
gtggaaggaaaacgtatcccctttgggttcaaataccgaacgctgccacacttcaccaag
gatgactactctcccgaggcgcgaggcttcgtcgagaattcctacctgcgtggtcttact
cctacagagttctttttccacgccatggctggtagagaaggtctcattgacactgctgtc
aagactgccgagacgggttatattcagcgacgtctggtgaaggcccttgaagatctgagc
gcacgctatgatggaactgtacgaaactcactgggtgatatcgttcagttcctgtatgga
gaagacgggttggatgccatgtgcatcgagtcacagaagctcggtatcctccagatgtcc
gatgttgcttttgaggacaagtatcgtcttgacttggccaatcctcctgaatggttcaag
aaagattatgagtatggcaacgagctggctggtgacaaagaatccatggatcttctcgat
tcggaatgggaaaccctactctccgacagacaaaccgttcgactcatcaacaagtccaag
atgggagaggagaaaatgcaactgccactcaacattggccgaatgattgaaactgcgaaa
cgagtcttcaatgttcgcgctaccgatcgtagcaacttgcgtcctgcggatgtcattaca
agagtgcaaaacctcctcagcgagctcaggattgtgcgaggattggatcccatttctaag
gaagccgatttgaacgcaactatcttgttcaaggcattgatccggtctcgacttgctttc
aaagaaattgtcaaggttcatcgtctgaataagctcgcattcgatcacgttcttggtgag
ctgcagaatcgttgggatcgctcttttgtcagccctggtgaaatggtgggcgttcttgct
gctcagtcgattggtgaacccgcgacgcaaatgacgctgaacactttccactttgctggt
gtgtcttccaagaacgtcacactcggtgttcctcgtctcaaggaaattctcaatttggca
aaggacatcaagactcccagtatggctgtgtacttgaacacgcatttgggaacacaagag
caggccaagaagctccgaagtttggtcgaatacaccaacttgcgctcaatcacttccgtg
acggagatttactatgatcctgatattcaaggcacgaccattgccgaggatatggacatg
gttgaatcctacttcctgatccccgatgatggtcaggacaacactgatcaacagtcaaga
tggcttctgcgtatcacactcgatcgacagaagcttcttgataaggaaatcaggattgat
gatgtggcccagcgcatcaaggaagagtaccccaacgatctcgctgtcatcttcagtgac
aacaacgcagacgagcaagtcatccgaatccgaacagttcgacaatcagaggaaaaggac
gaagacggagaaaagaagatcgaggatgacgtcatgctgaagcgtctggaagcccatctt
ctcgacacgcttactctacgtggtgtgccaggtgttgaaagggctttcttgacaaaggga
actcgcttggtggttgacaaggacgggtctgagcttgcgaagaaggatgatgaacgatgc
actcagtggtacttagatacctcgggctccgctcttcgagatgtccttgctgttgaaggt
gttgatgcgacgcgaacatacaccaacgatttgtggcagattgttgaagtctttggtatt
gaggctgcacgtgctgcattggtgaaggagttgaccaacgtgttggcctttgacggttca
tatgtcaatcaccgacacattgcactgttggttgatgttatgacgtatagaggcagcatc
tcggccgtcactcgacatggtatcaaccgcgctgacactggtgctttgatgcgttgttca
ttcgaggagactgtcgagattttgctggaggctgctgccaccggtgagcttgatgactgc
cgtggcatttctgagaatgtcatgctcggccagctcgcaccgatgggaactggaaacttt
gacgttttccttgatcccaagatgctggaaacagtcatctcggataattctcgcatgggt
ctcatgccaggcatgccagtcaaggagggcgaagccgaaggtgctgctacaccgtacgac
accggatcaccgatgtcaaacgactctggctacatgagcatgaactcgccagctgctgga
aacttctctcccatccagggtgcgggatcagaaaccccagctggcttcggcacagagtat
ggtggacaaggctttggcaacatgggatccatgagcccgtactcccgaggagcgacaagc
cccttcagcacgtcgcctacttcaccgttcagctcaggcatggttggatattctccttca
tcgcccaacgccggctactctccgacttcgcctctcctggacggtggtgctggtcgttac
gcaacgtctccttcgttcagcccgtcatccccgtcgttctcacctacctccccgatgcta
cgcccaacgagtcctgccagtccaaactacagcccgacgtcgccgagttactcgccgact
tcgccaacttcccctcggcactactcgccaacgtcgcctgcgcagttcaactcgcctacc
tctcccagctactcccctgccagtcccaactacagcccagcctcacccaaccttcatggc
gcagctggtgctacctctccttcatactctccagcttctccatcttggtctccaacttct
cctgaggcatactcgcccacgagcccaagctttcaaagaagccctggaaatcagcagagc
ccgacgagccccagttactcgccaacgtcgcctgctttctctccccggactcctggtccg
ggtaactcgggcaatcaatattctcccaactcgcccgctaacgattga
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integrated database retrieval system
