Pochonia chlamydosporia: VFPPC_16949
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Entry
VFPPC_16949 CDS
T09407
Name
(RefSeq) DNA-directed RNA polymerase I subunit
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pchm
Pochonia chlamydosporia
Pathway
pchm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pchm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VFPPC_16949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchm03021
]
VFPPC_16949
Enzymes [BR:
pchm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VFPPC_16949
Transcription machinery [BR:
pchm03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
VFPPC_16949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
28858695
NCBI-ProteinID:
XP_018136848
UniProt:
A0A179F0Q2
LinkDB
All DBs
Position
Unknown
AA seq
1666 aa
AA seq
DB search
MNIAQPISSEIDFVEFRFLSPEEIQAISVKRIENDNTFDSLLQPVPGGLYDPALGSWGDS
PCTTCHLNQQSCPGHPGHIQLPVPVYHPVFMDQAYHLLRATCVYCKGFRLRAVDLNKYIC
QLRLLQHGLIHEAHIVGSLGELNLASVSEEYLDSGGSEADEDGKPNEAIMRKRDKYVQEC
LRRVKSKRKSEIRMGKHEGMAQTRREVIKQFLADVIKKRICSSCEGISPAYRRDRFVSIF
EKSLSAKEKAKMSRRDLQQKDALTRVYQAKPKPTEDTVEILDGGSAAAEQSSDDETSSPA
AVDVAASQRYISPMEVRARLAELFDKEQEVISLLYNSKLPARHSPKVVPDMFFITTILVP
PNRYRPEARMGESQISEAQQNSLYKSILRSCSKIAQIYASLNDGTTDFTQLHYAWGETQE
AVNSLIDKSKNPVRGAAAKRNEDGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPNIE
TNEIGLPPVFASKLTYPEPVTSHNFRDMQQAVINGVSKWPGAVAIEDENGHVLNLRNKST
DERMSLANQLLAPTTTNSHSARPTLHKPSMMGHRIRVLPGEKTIRMHYANCNTYNADFDG
DEMNMHFPQNEVARAEALQIADTDHQYLSGTQGKPLRGLIQDHLSISVMLCSRDTFFTRG
DYQSMVYNTIRPESGHLVNGGRIQLVPPAILKPVPLWTGKQIITTLLKNIQPVNCGPLNL
KGTAQVKADQWAPKSEEGSILFQDGEFITGILDKSQIGQSSGGLIHAIHEIYGPTSAGQV
LNAFSRLLTRYLNVRAFSCGMDDLKLTSDGEASRTQALQAVDRLGLEVASSYVSLEKNSD
PTNPLLLERLEEVLRDDSKQEGLDLLMNAGSREITDAIQRACLPQGLEKPFPRNQMQVMT
TSGAKGSRVNASLISCNLGQQVLEARRVPLMVSGKSLPCFKAYETNITANGYIRSRFLTG
IRPQEYFFHLMAGREGLIDTAVKTSRSGYLQRCVIKGMEGLRVAYDTTVRDADGSIVQFL
YGEDGLDVTKQKYLTDFSFILQNLSSEVAQLRYNADIVARLGANRDIFTKYMKSTVKHFK
AGSLKGKDPLLGTANPATNLFVSSERFYDAMSSYLKENVDGLLREKNSTNENQSKSQQVA
LSRKNAELVFVMKYLQSLVEPGEAVGVVAGQSVGEPSTQMTLNTFHLAGHAASNVTQGIP
RLREILMTAAMIPSTPAMTLHPREGVSASDMERFAKSISAVPLSYILDSVTVQERIGRGQ
IYGLAKIYLIKFKLHPSREYRETYHVSISEVLNSFAYKLLRQIITLAKAELKKRGELETS
GMPDISQKVGVVEMAAPNADAETGGDADEDGGDDGDDDDYTNAKQRSKRTEAVSYGPNDE
ADDEVQKAMNEDDMDVDETGAEAVGGGASKDKPMQNGADREEEEDTDGDVDMESSSTRAE
YVASNFAEVTSFECDEKTGEWCNVTLEFDATVPKLLMLSIVQRALKKAMVREIRGIGTCR
VGEGRMLPEGDKEPIILAGGSNIQAVKEFGDYIDPNRIQTNDIYAVLNMYGVEACRSNIV
QELDGVFGSHGIKVDGRHLNLIADYMTRNGVFTAFSRNGLKGNVSPFTKMSFETTLAVLK
DAVLDGDWDELNSPSSQLVMGQLGKLGTGSFDVLTRLPTHHVESFA
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgcgcagcccatatcctccgagatcgatttcgtcgaattcaggttcttgtca
cccgaggagattcaggccatctccgtcaaacgcatcgaaaatgacaacaccttcgacagc
ttgcttcagcctgtgcctggcggtctctatgacccggctttgggatcatggggcgactca
ccttgcacgacatgccacctaaatcaacaatcctgccccggccacccgggacacatccaa
ttgcctgtgccagtctaccatccggtctttatggatcaggcataccacttactccgagcc
acctgtgtatattgcaaaggcttccgattacgcgccgtggacctgaacaaatatatatgt
cagcttcgtcttctccaacatggcctgatacacgaagcacatatcgttggttctcttggc
gagctgaatttggcatcggtctcagaagagtacttggattcgggtggaagtgaggcggat
gaggacggcaaaccgaacgaagccattatgcgcaagagagacaagtatgtacaagagtgt
ctccgccgtgtcaagtcaaaacgaaaaagcgagattcgcatggggaagcatgaaggcatg
gcgcaaactcgccgtgaggtcatcaaacaattcctcgccgatgtcatcaagaaaagaatt
tgttctagctgcgagggtatctcgccggcgtatcgcagagatcgattcgtcagtattttt
gagaaatctctgtcggccaaggagaaggcaaaaatgtctcggcgagatttgcaacaaaag
gatgcattgacccgagtctaccaggcaaagccgaaacccaccgaggatactgttgaaata
ctcgacggcggttctgcggctgctgagcaatcaagcgatgacgaaacctcgagtccagcg
gccgtcgacgtcgcggcatctcaaagatacatcagccccatggaggtgcgggctcgtttg
gcggagttgttcgacaaagaacaagaagtcatatcactcctatacaattcaaagctaccc
gcccgacactcgcccaaggttgtgcctgacatgttcttcataacaactattctcgtgccg
ccaaaccgctacagaccggaggcacgcatgggagagtcgcaaatctcagaagcccaacag
aactcactctacaagtcaatcctgcggagctgttcaaagatcgcccaaatttacgcctca
ttaaatgatggaaccaccgattttacacaattacactacgcctggggggaaacgcaagaa
gcagtcaattctttgattgacaagagcaagaaccctgtgcgtggtgcagctgcaaaacgc
aacgaagatggcatcaagcagaaactcgagaagaaagagggattgtttcgaaagaatatg
atgggcaagcgtgtcaactttgcagcccgaagtgttatctcaccagaccccaatatcgag
acaaacgagatcggtcttccgccagtctttgcatcaaaactcacctatccggaaccagtc
accagccataactttcgagatatgcagcaagctgtgatcaatggtgtcagtaagtggcct
ggagccgtggctatcgaagatgaaaatggccacgtcttgaaccttcggaacaaatcaacc
gatgaacgcatgtcactcgccaaccagcttctcgccccaacaacaacaaacagccactct
gcgaggcccaccttgcacaagccgtccatgatgggacaccgaattcgagttctacctgga
gaaaagaccattcgaatgcattacgcaaactgtaacacctacaatgcagactttgatggc
gacgaaatgaatatgcacttccctcagaatgaggttgcccgtgctgaggcacttcagatc
gcagataccgaccaccagtacttgtctggaacccaagggaaaccattgcgaggtctgatt
caagatcatctgtccatttcggtcatgttatgtagtcgcgatacctttttcacccgtggc
gactaccagtccatggtatacaatacaattcggccagagagtggtcatcttgtcaacggg
ggcagaattcagcttgttcccccagcgatcctgaaaccagtgccattgtggaccggcaaa
cagattatcaccactcttctcaaaaacatacagcctgtcaactgcggtccccttaacctg
aaaggaacggcacaggtcaaggcggaccaatgggccccgaaatccgaggagggttccatc
ttgttccaagatggcgagtttatcaccggtatccttgataaatcacaaatcggccagagc
tccggtggtctgattcatgccattcacgaaatttacggcccaactagcgccggtcaggtt
ctcaacgctttcagtcggttgttgactcgctatctcaatgtcagggcattctcctgcggt
atggacgacctaaagcttacttctgatggtgaagcatctcggacgcaggcactgcaagct
gttgatcgccttggcctggaagttgcttcgtcgtatgtctctcttgaaaagaactcagac
cccaccaatcctttgcttctggagcgtcttgaggaagttcttcgtgacgattcaaaacaa
gaaggattggatctcttgatgaacgctggatctagagagatcacagatgcaattcaaaga
gcctgtcttcctcaaggccttgaaaagccatttccccgaaaccaaatgcaagtcatgacc
acttccggcgccaagggctctagggtcaacgcatccctgatctcttgcaacctaggacag
caagtcttggaagccaggcgtgttcctctcatggttagtggcaagtcattaccttgcttt
aaggcctatgaaacgaacattacagccaatggttatatcagaagccgtttcctcacagga
atccgaccacaggaatactttttccatcttatggcaggaagagaaggtcttattgacaca
gccgtgaaaacgtcgcgctctggttacctccagcgatgtgttattaaagggatggagggt
ctaagagtggcgtatgacacgaccgtccgcgacgctgacggttccattgtacagtttctc
tacggcgaggacggtctggatgtcacaaaacaaaagtacctcaccgatttcagctttatc
cttcaaaatttgtcatcggaagttgcgcagttacgatacaacgctgacatcgtcgcacgg
cttggggcaaatcgagacatcttcacaaaatacatgaagagtacagtcaagcacttcaaa
gccggcagcctcaaagggaaggatccgcttttaggcaccgcgaatccagcaaccaatctt
ttcgtgtcgtctgagcgattctatgatgccatgtcgtcctacttgaaggaaaatgtggat
ggtcttcttcgcgagaaaaacagcaccaacgagaaccaaagcaaatctcagcaggtggcc
cttagccgcaagaacgccgagttggtctttgtgatgaagtacctccagtcgctggttgag
ccaggtgaggctgtcggtgttgtggcaggtcaatccgtgggcgagccgtcaacacaaatg
acgctgaacacattccatttggccggtcacgctgccagcaacgtcacgcagggtattcca
cgtctaagagaaattctaatgacagccgcaatgatcccatctacacctgcgatgactctc
caccctcgtgagggagtctccgcaagcgacatggaacgcttcgcaaagtccatcagtgcc
gtgcccctgtcctacattttggatagtgttactgtgcaggagcgaatcggccgcggtcag
atctatggtctggccaagatatatctgatcaaattcaagctccacccttcacgggagtac
cgggaaacataccacgtgagcatttccgaagtactgaactctttcgcgtataaacttcta
cgccagattatcacactcgccaaagctgaactcaaaaaacgaggtgaattggagacttca
ggcatgcctgatatttcgcagaaggttggcgtggtcgagatggcagctccgaatgcagat
gctgagactggtggtgatgcggacgaagatggaggcgacgatggggatgatgatgactac
actaatgccaaacaacgatctaagcgcactgaggccgtttcctatggaccaaatgatgag
gccgatgatgaagtccagaaggcgatgaacgaggatgacatggatgtcgacgagacgggt
gctgaggctgttggcggcggcgcaagcaaagataagccaatgcaaaacggtgcagacagg
gaagaagaagaagacacagacggcgacgtggacatggagtcgagcagcacccgcgcggaa
tatgttgcaagcaactttgctgaggttacaagctttgagtgtgacgagaaaacaggagag
tggtgtaatgtgactctcgaattcgacgccaccgttcccaagttactgatgctcagcatt
gtccagagggcgctgaagaaggccatggtaagggaaatccgtggcatcggtacttgtcga
gtgggcgaagggcgcatgctgcctgagggagacaaagagcccattatccttgcaggcggc
agcaacatccaggcggttaaagagtttggggattacatcgatccaaaccgcattcagact
aatgacatatatgctgtgctaaacatgtatggcgtggaagcatgtcggagcaatatcgtt
caagagctagacggtgtctttggttctcacggcatcaaagtcgacggtcggcatctgaac
ttgattgcagactacatgacgagaaacggcgtattcacagccttcagccgaaatggtttg
aagggtaatgtcagcccatttaccaagatgagtttcgagacaacgctagctgtcctcaaa
gacgcggtgctcgacggagactgggacgagctgaacagcccaagcagtcagttggtcatg
ggccagctggggaaactgggcactggcagctttgacgtactcacaagattgccaacacat
catgtagaatcctttgcatga
DBGET
integrated database retrieval system
