Penaeus chinensis (fleshy prawn): 125035261
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Entry
125035261 CDS
T08118
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03020
RNA polymerase
pchn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125035261
09124 Replication and repair
03420 Nucleotide excision repair
125035261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchn03021
]
125035261
03400 DNA repair and recombination proteins [BR:
pchn03400
]
125035261
Enzymes [BR:
pchn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125035261
Transcription machinery [BR:
pchn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125035261
DNA repair and recombination proteins [BR:
pchn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125035261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
125035261
NCBI-ProteinID:
XP_047483487
LinkDB
All DBs
Position
19:4189037..4212629
Genome browser
AA seq
1927 aa
AA seq
DB search
MAGLESKAPLRQVRRVQFGILSPDEIRRMSVTEGGIMFSEVYENGRPKLGGLMDPRQGCL
DRNTRCTTCAGNMADCPGHFGHMDLAKPVYHVGFLTKTMKILRCVCFYCSKLLYSTQHPK
VREIVTKSKGQPRKRLLHVYNLCKGKMICEGGDEVDIVKEPEDLGQHPHHPHHPHHTGQL
RKATTGGHGGCGRYQPNVKRVGLDLIAEWKHVNEDTQEKKQVLSAERVYEIFKHISDEDC
YLLGMDPRYARPDWMILTVLPVPPLPVRPAVVMYGSARNQDDLTHKLSDIIKANNELLRN
EQSGAAAHVIVENLKMLQFHVATMTDNDMPGMPRALQKSGRPLKALKSRLKGKEGRIRGN
LMGKRVDFSARTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNMTKMMELVKRGNNQY
PGAKYIVRDNGARIDLRYHPKPSDLHLQCGYRVERHITDGDLIIFNRQPTLHKMSMMGHR
VKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENLHLTPRMVVTPQSNRP
VMGIVQDTLTAVRKMTKRDVFLEKSEMMDLLMFLPIWDGRMPHPAILKPKPLWTGKQLFS
LIIPGNINVVKTHATHPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGASSGSMM
HLAWMELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTISDPNTYRVIQNTIKKAKEDV
IEVIHKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAG
SKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTP
SEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGE
DGLAGEFVEFQNLPTIKLSTRRFEDRYRFDISNERYLRKLFTEEVVRDVLGSPDAITSLE
TEWQRLQEDRQILRQVFTKGDSKVVLPCNLDRMIWNVQKIFHINRRSQTDLSPVRVVDGV
RRMLDRCIIVSGNDRISRQANENATLLFQCLVRSTLCTKKVSEEYRLTVEAFNWLVGEIE
TRFNQALASPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK
PKAPSLTVFLLGAAARDAEKAKNVLCRMEHTTLKKVTSNTAIYYDPDPQNTVIVEDQEFV
NVYYEMPDFDVSRISPWLLRIELDRKKMTDKKLTMEQISQKINSGFGDDLNCIFNDDNAE
KLVLRIRIIVGDDKLSDDAEEQVDKMEDDTFLRCIEANMLNDLTLQGIESISKVYMHLPQ
TDEKKRIVINEQGEFKAIAEWLLETDGTALMKVLSERDVDPIRTSSNDILEVFEVLGIEA
VRKCIEKEMNAVLMFYGLYVNYRHLALLCDVMTSKGHLMAITRHGINRQDTGALMKCSFE
ESVDVLMEAASHAEVDPIRGVSENIMLGQLPRLGTGSFDLVLDDDKCKLGMEIPMPGTGM
VMAGSLFGAASPSSALTPAQTPWATASTPSMSPYGGWTPGVGSGMTPGGPAFSPTVTDTG
LSPGYSPAWSPQPGSPGSPGGAMSPYFPSPASALSPSYSPSSPAYQPTSPSLTPASPGYS
PTSPTYSPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYAPNYSPSSP
GYSPTSPSYSPTSPSYSPTSPQYSPASPSYSPSSPKYSPTSPSYSPTSPTYSPGSPSYSP
SSPKYSPTSPTYSPTSPSYSPSSPKYSPTSPHYSPTSPSYSPTSPTYSPSSPQYSPSSPK
YSPTSPTYSPSSPKYSPTSPTYSPTTPGYSPTSPIYSPSFEEEEEEEQEAEAEEEEPNKK
QKKKGKR
NT seq
5784 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcttggagagcaaggcgccgctgcggcaggtcaggagagtccagttcggtatt
ctcagtccggacgaaatccgccgcatgtccgtcacagaaggcgggatcatgttctccgaa
gtatacgagaacggtcggccgaagttgggcggcctcatggaccctcgacaaggctgtttg
gacaggaacacccgctgtaccacatgcgcgggcaacatggccgattgtccgggtcatttc
ggccacatggatttggctaaaccggtctaccatgttgggttcctcacgaagacaatgaag
attctccgatgcgtgtgcttctactgcagcaagttgctttatagtacgcaacacccaaaa
gttcgcgagatcgtgaccaagtcgaagggtcagcctcggaagcgcctcctgcacgtctac
aacctgtgcaagggcaagatgatatgcgaaggaggcgacgaagtggacatcgtcaaggag
cccgaggacctcggccagcaccctcaccaccctcaccaccctcaccacaccggccagctc
cggaaggcaaccacgggcggccacgggggttgcgggcggtaccagccgaacgtgaagagg
gtgggactcgacctgattgccgagtggaagcacgtcaacgaagatactcaggagaagaag
caggtcctttcagccgagagggtctacgagatcttcaagcatatttcagacgaggactgc
tacctgctgggcatggacccccgctacgcgcgccccgattggatgatcctgacggtgctg
cccgtgccgccactgcccgtgcgccccgccgtcgtgatgtacggctcggcgcgcaaccag
gacgatctcacgcacaagctgtccgacatcatcaaggccaacaacgagctcctgcgcaac
gagcagagcggggcggccgcgcacgtcatcgtcgagaacctcaagatgctgcagttccac
gtggccaccatgacggacaacgacatgcccggcatgcccagggcgctgcagaagtccggg
cggccgctcaaggccctcaagtcgcgcctcaagggcaaagagggcagaatccgcggcaac
ctcatgggcaagagggtcgacttctccgccaggaccgtcatcaccgccgaccccaatctc
aggatcgaccaggtgggcgtcccgaggtccatcgcgcagaacctcacctacccggagatc
gtcacgccctttaacatgaccaagatgatggaactggtgaaacgcggcaataaccagtac
ccgggcgccaagtacatcgtgcgggataacggggcgcggatcgacctacgctaccacccg
aagccatccgatcttcatttacagtgcgggtatcgggtcgagcgacacatcacggacggc
gatctgatcatcttcaatcggcaacccacacttcataagatgtctatgatggggcatagg
gttaaggtcctcccttggtccacttttcgtatgaacctctctgtgacatccccttacaac
gcggacttcgacggggatgagatgaacctgcacgtcccccagagcatggagacacgagcc
gagatcgagaacttgcacttgacgcctcggatggttgttacgccacagtccaacagacct
gttatgggtattgtgcaggataccctcacggctgttcggaagatgacaaaaagggatgtg
tttttggagaagtcggagatgatggacttgctcatgttccttccaatctgggacggaagg
atgccccacccggccatcctcaaacccaaacccctgtggaccggaaaacaactcttttct
ctcattattcctggtaatattaatgtagtgaagacccatgcgacacatcctgacgacgaa
gatgacggtccgtataagtggatctctccgggagacaccaaggtcctggtggagcacggc
gagctgatcatgggcatcctgtgcaagaagacgctgggcgcgtcgtcgggctccatgatg
cacttggcgtggatggagctcggccacgagatcgccggccgcttctacggcaacatccag
acggtggtgaacaactggctgctgctggagggccacagcatcggcatcggcgacaccatc
tcggatccgaacacgtaccgcgtgatccagaacaccatcaagaaggccaaggaggacgtg
atcgaggtgatccacaaggcgcacaacgacgagctcgagcccacgccgggcaacacgctc
cggcagacgttcgagaaccaggtgaaccgcatcctcaacgacgcccgtgacaagacgggt
ggctcggccaagaagtccctcacggagtacaacaacctgaaggccatggtggtggcaggc
tccaagggctccaacatcaacatctcgcaggtgatcgcgtgcgtgggccagcagaacgtc
gagggtaagcgcatccccttcggcttccgcaagcggacactgccgcacttcattaaggac
gactacggtcccgagtcaaggggcttcgtcgagaactcgtacctggccggccttacgccc
tccgagttctacttccacgccatgggcggccgcgagggcctcatcgacacggccgtcaag
accgccgagacaggctacatccagcggcgtctgatcaaggccatggagagcgtgatggtc
aactacgacggcaccgtcaggaacagcgtgagccaggtcatccagctccgttacggcgag
gacggcctcgccggcgagttcgtcgagttccagaacctgcccaccatcaagctgtcgacg
cgccgcttcgaggaccgctaccgcttcgacatctccaacgagaggtacctccggaagctg
ttcacggaggaggtggtcagggacgtcctcggctcgcccgacgccatcacaagcctcgag
accgagtggcaaaggctgcaggaggaccggcagatccttcggcaggtgttcacgaagggc
gactccaaggtggtcctcccgtgcaacctggaccgcatgatctggaacgtgcagaagatc
ttccacatcaacaggcgctcccagacggatctctcgccggtgcgggtcgtcgacggcgtc
aggaggatgctcgacaggtgcatcatcgttagcgggaacgacaggatcagtcgacaggcg
aacgaaaacgccacgctgctgttccagtgtctcgtgaggtcaactttatgcacgaagaag
gtgtcggaggaatacaggttgacggtcgaggcgttcaactggctggtcggcgagatcgag
acacggttcaaccaggcgcttgcctcccccggcgagatggtgggtgccctcgccgcgcag
tctctgggcgaacccgccacccagatgaccctgaacaccttccacttcgccggcgtctcc
tccaagaacgtcaccttgggcgtgccgcgtctcaaggagatcatcaacatcagcaagaag
ccgaaggcgccgtcgctcaccgtgttcctcttgggcgccgctgccagggacgctgagaag
gcgaagaacgtgctgtgtcggatggagcacaccacgctgaagaaggtaacctcgaacacc
gccatttactacgacccagacccccaaaacacagtcattgtcgaggaccaggaattcgtt
aacgtttactacgaaatgcccgacttcgatgtctcgcggatttccccctggcttctgcgc
atcgaactcgacaggaagaagatgacagacaagaagctgacgatggagcagatttcgcag
aagatcaactccggcttcggcgacgacctcaactgcatcttcaacgacgacaacgctgag
aaactcgtgctccgaatccggatcatcgtgggggatgacaagctttcggacgacgcggaa
gagcaggtggacaagatggaggacgacacgttcctgcggtgcatcgaggccaacatgctg
aacgacctgacgctgcagggcatcgagtccatctccaaggtgtacatgcatctgccgcag
acggacgagaagaagcgcatcgtcatcaacgagcagggcgagttcaaggccatcgccgag
tggctgctggagacggacggcacggcgctcatgaaggtgctgtccgagcgcgacgtggac
cccatccgcacgtcctccaacgacatcctcgaggtgttcgaggtgctgggcatcgaggcc
gtgcgcaagtgcatcgagaaggagatgaacgccgtgctcatgttctacggcctgtacgtc
aactaccgccacctggccctgctgtgcgacgtcatgacgagcaagggccatctcatggcc
atcacgcgccacggcatcaaccgccaggacacgggcgccctcatgaagtgctcgttcgag
gagtcggtggacgtgctgatggaggcggcgtcgcacgccgaggtggaccccatccgcggc
gtgtccgagaacatcatgctgggccagctgccgcgcctgggcaccggctccttcgacctg
gtgctcgacgacgacaagtgcaagctgggcatggagatccctatgccgggcacgggcatg
gtcatggccggcagtctgtttggcgccgcgtcgccctcgtccgccctcacgccggcgcag
acgccctgggccacagcctccacgccctccatgtcgccctacggcggctggacccccggc
gtgggcagcggcatgaccccgggcggccccgccttctcccccaccgtcaccgacacgggc
ctgtcgccgggctactcccccgcgtggtcgccgcagcccggcagccccgggtccccgggc
ggcgccatgagcccctacttccccagccccgccagcgcgctctcgccctcctactccccc
tcctcccccgcctaccagcccacctcgccgagcctcacccccgcctcccccggctactcc
ccgacctccccgacctacagccccaccagcccccagtactcgccgacctcgccctcctac
tcgcccacgtcgccctcctactccccgaccagcccctcctactcgccgacctcgccctct
tactcgccgacctccccctcctactccccgacctccccgtcgtactccccgaccagccct
tcttactccccgacgtctccatcttactccccgacaagtcccagctactccccgacttct
ccctcgtactccccgacctcgccctcgtactccccgacctcgccctcgtactcgccgacc
tccccctcgtactccccgacttccccgagctacgccccgaattactccccttcctcgcca
gggtactccccgaccagcccttcctactccccgacctcgccctcttactccccgacttcg
ccccagtactcccccgcctccccttcctactccccctcctcgcccaagtactccccgacc
agccccagttactccccgaccagcccgacttactccccgggatcgccctcctactccccc
tcctcgcccaagtactcgccgacctcgccgacctactcgccgacttcgccttcttactcg
ccctcctcgcccaaatactccccgacctctccccactactccccgacctcgccgtcctac
tcgccgacttccccgacttactccccctccagccctcagtatagcccgagcagcccgaaa
tacagcccgaccagcccgacttacagcccgagtagcccgaaatacagcccgaccagcccg
acttacagcccgaccacgccagggtacagcccgacttcgccgatttattcgccgagtttc
gaagaagaggaagaggaagagcaagaggcggaggcggaggaagaggaaccgaacaagaaa
cagaagaagaaaggaaagcgttag
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integrated database retrieval system
