Prosopis cineraria: 129305806
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Entry
129305806 CDS
T09047
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pcin
Prosopis cineraria
Pathway
pcin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129305806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcin03400
]
129305806
DNA repair and recombination proteins [BR:
pcin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129305806
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
CDT1_C
Motif
Other DBs
NCBI-GeneID:
129305806
NCBI-ProteinID:
XP_054801882
LinkDB
All DBs
Position
Unknown
AA seq
1321 aa
AA seq
DB search
MSSSRRQSNGRSPLVNPQRQITSFFSKTTSSPPSFPAQQKANPNPSPPSILSKQKLSPSR
ITDRKSSPSPSPSTPSPSPPNPRCNKPLLLIGTSSPHSPSRPTPSSSPPLDSLPYGQEVV
GRRIKVYWPLDKTWYEGCVGSFDKHTGKHLVLYDDDEEESLDLAKEKIEWVQETVKKFKR
LRRGFCASKQMVIEDEGAENAGVREEEGSGDDGHDDDSSDDDWGKNEIADDAEDSDEDME
LKDEEDVAERPKAKGGKKFEPTKPTKRKPSGGEKRGPAKKSKIAVEFGKGSFKVSMPEQK
SNSDSKWSSKKAINEIGCVATGDAPERFAAREAEKLHFLRVNRKDARRRRPGDENYDPKT
LYLPPDFLKSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGE
QPHCGFPEKNFSMNVEKLAGKGYRILVVEQTETPEQLEIRRKKGSKDKVVKREICAVVTK
GTLTDGELLSVNPEASYLMALTECHESKEDESLERIYGVCVVDVATSRVILGQFEDDSEC
SALCSILSELRPVEIIKPAKLLSAETERVLRKHTRNPLVNELVPNVEFWDAEKAFIELKR
FYSNSGLSSVEGDGIGGMPDVLLEMVRAVDDNRSALSALGGALYYLKQAFLDESLLRFAQ
FEILPFSNFDGLASKPYMVLDAAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLK
TWLARPLYHLEKIKERQEAVAGLRGVNLPSSLEFRKALSRLPDMERLLACIFSSSEASGR
NANKVVLYEDAAKKQLQQFVSALRGCELMARACSLLHVILNNNESRQLHHLLTPGEGLPD
VHTLLDHFKDAFDWDEANNSGRILPHKGVDSEYDSACKMVDEIESSLLQHLKEQRKFLRD
NSITYVSVGKEAYLLEVPESLSGNIPQDYEMRSSRKGFFRYWTPDIKKLLGKLSQGEQEK
ESSLKTILQRLVCRFCEHHTKWRQLVSATAELDALISLAIAGDYYEGSICQPRFLGSLCT
KETPCLSAKGLGHPVLGSDYLGKGAFVPNDITIGGPRQASFILLTGPNMGGKSTLLRQVC
LAVILAQVGADVPAKSFDLSPVDRIFVRMGAKDNIMADQSTFLTELSETATVLSSATRNS
LVALDELGRGTSTSDGQAIAESVLEYLVQKVQCRGLFSTHYHLLAVDFHKDPKVSLCHMA
CQVGDGVGGVDEVTFLYRLTPGACPKSYGVNVARLAGLPTSVLQKAAAKSREFEAKYGKH
RKASLENNASNQSLADKMAVIIQKLINATTNLNILENLSDSFLSELHNKTRALRQMLNRS
K
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctcacgtcgtcagagcaatggtcgatcgcccctagtcaatcctcagcgtcaa
attacatccttcttttctaaaaccacttcttctcctccttcatttcctgcccagcagaaa
gctaaccctaacccttcgcccccctccattctctccaagcagaaattaagccctagccga
atcactgatcgaaaatccagtcctagccccagcccttctacaccttccccttcccctccc
aatccaagatgcaacaaacctcttcttctcatcggcacttcatcaccccactctccgtct
cgacccaccccctcgtcttcaccaccattggatagcctaccgtacggccaagaggttgtc
ggaagaaggatcaaggtttattggcctttggataaaacctggtatgaaggctgtgtcggc
tcatttgataagcacacaggcaagcatttggttctatacgatgatgatgaagaggaatca
ttggaccttgccaaggagaagattgagtgggttcaagagactgtgaagaagttcaaacgg
ctgcgtcgtggcttttgtgcttcgaagcaaatggtgattgaggatgagggagcagagaat
gctggtgtcagggaagaagaaggcagtggtgatgacggtcatgacgacgattctagcgac
gatgattgggggaagaatgagattgcggacgacgccgaggactctgatgaagacatggag
ctgaaagacgaggaggatgtagccgagaggcctaaagcaaaaggaggtaagaagtttgag
cccacaaagcccacaaagcggaaaccaagtgggggagagaaacggggacctgcaaaaaag
agcaagatcgcagtagaatttgggaagggaagtttcaaggtttcaatgccggagcaaaaa
agtaattcggacagtaagtggtcaagtaaaaaggccattaatgaaattggttgtgttgca
actggcgatgcccccgaaagatttgcagcacgtgaagctgagaaattgcatttcctccga
gtaaatcgaaaggatgccagaagaagacgtccaggagatgaaaactatgatccaaagacc
ctatatctgcctcctgatttcttaaagagtttgtccgatgggcagaaacaatggtgggag
ttcaagtcaaagcatatggacaaagttctgttttttaagatgggtaaattttatgaactt
tttgaaatggatgcacacgtgggagtgaaagagcttgacttgcagtatatgaagggggaa
caacctcattgtggatttccagagaagaatttttcaatgaatgtggagaaactggctggg
aagggctatcgaattcttgttgtagagcagactgaaacacctgaacaattggagattcgt
cgcaagaagggttctaaagataaggttgtgaaacgggaaatatgtgctgtggttacaaaa
ggtacattaactgatggggagttgttgtcggtaaacccagaagcttcttatctaatggcc
ttaactgagtgccatgaaagcaaggaagatgaaagtttggaacgtatttatggtgtttgt
gtagttgatgttgctacgagcagagtcattcttggccagtttgaggatgattcagagtgc
agtgccttgtgcagtattttatctgaacttaggccagtggaaattataaaacctgctaaa
ctgctcagtgctgaaacagagagggtactgcggaagcatacaagaaatcctctggtcaat
gaattagttcctaatgtggaattctgggatgctgagaaagcttttattgaattgaagaga
ttttacagtaattcaggtctttctagtgttgaaggtgatgggataggtggcatgccagat
gttttgctggagatggtgagagcagtcgatgacaatagaagtgcactttcagcactgggt
ggtgctctatattatctgaaacaggctttccttgatgagtcattgcttagatttgcacaa
tttgagatacttccattttccaattttgatggtcttgcttccaaaccatacatggttcta
gacgctgcagccctggagaatcttgaaatttttgagaatagcagaaatggtgattcttca
ggcacactttatgcacaattgaaccaatgtgttactgcatttgggaagagattgctgaag
acatggcttgcgagaccattatatcatctagagaaaataaaggaacgccaagaagctgtg
gctggtctaaggggagttaatctaccttcctcactagaattccggaaagcattatcaagg
ctgcctgatatggagcggttgctggcatgcatattctctagtagtgaagctagtggccgg
aatgctaataaggtggttctgtatgaggatgcagcaaagaaacaactgcaacagtttgtt
tcagcgcttcgtggatgtgaactaatggcacgagcatgttcattgcttcatgtcattttg
aacaataatgaatctaggcaacttcatcatttgttaacacctggagaaggtcttccagat
gttcatacgcttttagatcatttcaaggatgcctttgattgggatgaagccaataactct
gggcgtatactacctcacaagggagttgattctgagtatgactcagcctgcaaaatggtt
gatgaaattgaatccagtctattgcagcatctcaaggaacaaaggaaatttcttcgagac
aactcaattacttacgtttctgttggaaaggaggcatacctgttggaagtgccagaaagt
ttgagtggaaatattccacaggattatgagatgaggtcatccagaaagggttttttcagg
tactggactccagatattaaaaagttactggggaagctttcccaaggagaacaggaaaag
gagtcctcattgaaaactattttacagagattagtttgtcgtttttgcgaacatcatact
aagtggaggcagttagtgtctgctactgctgagctggatgctttgatcagcttagcaatt
gccggtgactactatgaaggttcaatatgccaaccaagattcttaggctcactatgcaca
aaagaaactccatgcctctctgctaaaggtttaggacacccagtccttgggagtgattat
ttaggcaagggtgcctttgtaccgaatgacataaccattggtggtccacgtcaggcaagc
tttatacttctaactggccctaacatgggtggaaagtcgacgcttcttcgccaagtttgc
ttggcagtgattttggcccaggtaggagctgatgttccagccaaaagttttgatttgtca
cctgtggaccgaatttttgttcgaatgggtgccaaggataatatcatggctgaccaaagt
acatttttaactgagctttcagaaactgcaactgtgctgtcatcagctactcgtaattca
ttagtggctttggatgagcttggacgtgggacctcaacttccgatggacaagccattgcg
gaatcagtacttgaatatcttgtgcaaaaagtgcagtgtcgtgggttgttttctactcat
tatcacctattagctgttgatttccacaaggaccccaaggtttctctctgccatatggct
tgtcaagttggtgatggagttggaggcgtggatgaagtcacatttctttataggttgaca
cctggtgcatgccctaagagctatggggttaatgttgctcggttagctggtcttccaact
tctgttctgcaaaaggctgctgctaagtctagagaatttgaggccaaatatggtaaacac
agaaaggcatctctggaaaacaacgcttccaatcaaagtttggccgataagatggccgtc
atcattcaaaaattgatcaatgccaccacaaatttgaatatcctggaaaacttgtccgat
agtttcctcagtgaacttcataataaaacaagagcgctgcggcaaatgttaaaccgttcc
aagtaa
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