KEGG   Prosopis cineraria: 129322328
Entry
129322328         CDS       T09047                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
pcin  Prosopis cineraria
Pathway
pcin03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pcin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    129322328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcin03021]
    129322328
Enzymes [BR:pcin01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     129322328
Transcription machinery [BR:pcin03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     129322328
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 129322328
NCBI-ProteinID: XP_054824582
LinkDB
Position
Unknown
AA seq 1447 aa
MDDDFSHEQKVPCGLITGIKFDVLTETDREYISALQINAAGQVTCSDLGLPNPSWECSTC
GSKERKFCEGHFGVIKFPFPLLHPYFLSEISEILNKICPGCKSIRQELWFKGVHSKNKQP
MGCKYCAGSSTGFYPAMKFKVSSNDLFRRTAIMVEINEKNPKKILRGLPADYWDFIPSDV
QQEESCMKMNRRVLSPAQVDDLLSDVDPSFIEKFVSQSDLLFLHSFLVTPNSHRLTEIMH
ASSNENRLFFDDRTRAYKKLVDFRGTADELISRVLDCLRISKLNPDKTPDNSFAALQQRK
LKENACTSSGLRWMKDVVLGKRNDHSFRTVVIGDPNLKLGQIGIPFQIAESLLVSEHVNR
QNKEKLLYCCELLLLEKGHIRVCRKGKPLLLYKKEDLKIGDMIYRPLSDGDMVLINRPPS
IHPHSLIALFVRVLPMSYVVSINPFCCSPLRGDFDGDCVHGYIPQSIGSRVELNELVALD
RQLINEQSGRNLLSLSQDSLTAAYLLMEDGALLNIYQMQQLQMFCCHNLIPPAIVKAHFS
NSSFWSGKQLFSMLLPPDFDYSCPSSDVFISEGELISHSDSSGWLRDSSCNIYQSLVQHY
PEKFLGFLHVAQKVLCEWLSMTGFSVSLSDLYLSSDSYSRKNMMEELCYGLQEAEYACKF
KQLLVTHHQDEISGNGEEKLNSFVVEGEHLNYDRQISAALSQCSVDAFRQVYRDIQSLAI
KFGSKDNALLTMFKAGSKGNLLKLVQHAMCLGLQHSLVRLSFKIPHQLSCAAWNSQKEVD
SIHMFYDTPVSAQSYIPYAVVESSFLTGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRL
MFFMRDLYLAYDGTVRSSYGSQLIKFSYDTNDDPSADIYCQDGAIGGQPVGALSACAISE
AAYSALDQPISLLETSPLLNLKKVLECGSKKKSGDQTVSLFLSENLNRQKYGFEYGALEV
KNHLERLRFSDIVSNVMIIFTQPNCMQRKLSPWVCHFHINMAILTKRKLKVDLIIDSLHK
RWNSQAQRCKSQVVLPSLEISSKKCSMAGNNEKGEDNLCITVTLVENPRDYIQLDFVQGW
FIPFLLGTAIKGCLEITKVDIIWSDRSKVSKSNSSSGELYLRVTLSHDRGSGRFWSTLVN
HCLPIRHLIDWTRSHPENIHHFCSAYGIDSGWKYFHNSLESAISDTGKIILPKHLLLVAD
SLSVSGEFVGLNPKGMARQRQHASVSSPFVQACFSNPGSCFIKAAKAGVRDDLQGSLDAL
AWGNCPSIGTGGQFDIMYSNKGYELDKPVDVYKLLEVNVDEPNQQINTFEAQMYLSDKCS
AMYKKGCLALKGLIRKLVSVDDILKLANKAKRILKVYSPDQQLNEVDKQIMKQVLHFHPH
WNKKIGNGVRDIKVGQHPIHQNTHCFFIVRNDESVEDFSYRKCIHNALEIIAPARARRYE
EKWSGSM
NT seq 4344 nt   +upstreamnt  +downstreamnt
atggatgatgacttctctcacgagcaaaaggtgccatgtggtctcataacggggataaag
tttgatgttttaactgagacagatagagagtatatatctgcattgcagattaatgcagct
gggcaggtcacctgttctgatttgggtcttccaaatccatcttgggagtgctccacatgt
ggttcaaaggaaaggaaattctgcgaaggtcattttggagttatcaaatttccttttccg
ttgctccacccatattttctctctgagatttcagaaattttgaacaaaatctgccctgga
tgtaagtctattcgacaagaattgtggtttaagggtgttcattcaaaaaacaagcaacca
atgggttgcaaatattgtgctggaagttcaactgggttttatccggcaatgaaattcaaa
gtttcttcaaacgatctattcagaagaactgcaattatggtggaaataaatgagaaaaat
ccgaagaaaattttgagaggattgcctgctgattattgggattttattccaagtgatgtt
caacaagaagaaagttgtatgaaaatgaatagaagggttttatcacctgctcaggttgat
gatttgttgagtgatgttgatccaagtttcattgaaaagtttgtttcgcagagtgatttg
ctttttctccatagcttccttgtgacaccaaattctcaccgtctgacagaaatcatgcat
gcttcttctaatgagaaccgattgttttttgatgacaggacaagagcatacaagaaactg
gttgacttcagaggcacagctgatgagttaatttctcgtgttttggattgtctgaggatc
tctaagctaaatcctgataaaacaccagataatagttttgctgctctccagcaaagaaag
cttaaagaaaatgcttgcacctcatctggtttgagatggatgaaagatgttgttcttggg
aagcgcaatgatcattcattccgtacagtagttattggtgatccaaatctcaagcttggc
caaattggtatcccttttcaaattgcagaaagtttgctggtttctgaacatgtcaatagg
caaaataaggaaaaattgctttactgctgtgagcttcttttactagagaaggggcatata
cgtgtctgtagaaaaggcaaaccattgttattgtataaaaaggaagacctcaagataggg
gacatgatttataggcctcttagcgatggggatatggtcttgatcaataggcctccttca
atacatccacattcgctgattgccctttttgttagggtccttcccatgtcatatgtggta
tctattaatccattttgttgttccccattgcgtggcgattttgatggggattgcgtgcat
ggttatattccacaatcaattggttcaagagttgagctgaacgagctagttgcgttagat
aggcaattaataaatgagcaaagtggtagaaatctactttcgcttagtcaagacagttta
actgctgcttatttacttatggaagatggggctttgttaaatatttaccaaatgcagcag
cttcaaatgttttgctgccataatctgataccacctgcaattgtaaaagctcattttagt
aattcttctttctggagtggcaaacaattatttagcatgctcttgcctcctgattttgac
tactcctgtccttcaagtgatgtttttattagtgagggggagttaatatcacattctgat
tcttctggttggttacgtgactcttcttgtaatatatatcagagcttggtgcagcattat
ccggagaaatttctaggcttcttgcatgtagcgcaaaaagttctttgtgagtggttgtct
atgactgggtttagtgtatcactctcagacttgtacctttcttctgactcctactcacgg
aaaaatatgatggaggaactctgctatggcttgcaagaagcagaatatgcatgtaagttt
aaacagttgttggtgactcatcatcaagatgagatttctggaaacggagaagagaaactg
aattcttttgttgttgaaggagagcatctgaattatgacaggcaaatatctgcagctctc
agtcaatgttcagttgatgcatttcgacaagtttatagagatattcaaagcttagccatc
aaatttggatccaaggacaatgctttgcttacaatgtttaaagctggaagcaagggtaat
ttactcaaattagtgcagcatgcgatgtgtcttggcttgcaacattctctggttcgccta
tcattcaaaattccacatcagctttcgtgtgctgcttggaatagtcaaaaggaagttgat
tcaatccatatgttttatgatactcctgtatctgctcagtcttacattccatatgctgtg
gttgaaagctcatttctgacagggttgaatcctcttgaatgttttgttcattcagttaca
agccgagatagttcattcagtgacaacgctgatctacctggaactttgacgcgaagactt
atgttcttcatgcgtgatttgtaccttgcatatgatggaacagtgagaagttcatatggt
agtcaacttataaagttctcatatgatacaaatgatgacccatctgctgatatctattgt
caagatggtgctattggtggccaacctgtcggagcactttcagcttgtgcaatttctgaa
gctgcgtacagtgctttggatcaaccaatcagtctacttgaaacatcacctttgctgaat
ttgaaaaaagtactggagtgtggttcgaagaaaaaaagcggtgaccagacagtgtcttta
tttttatctgagaatctgaatagacagaaatatgggtttgaatatggagccttggaagtt
aaaaatcatttggagagactgcggttttcagacattgtttctaatgtcatgataatattc
acccaaccaaattgtatgcaacggaaattgagtccttgggtgtgccattttcatattaac
atggcaattttaacgaagagaaagctaaaagtggatttgattattgactctttgcacaaa
agatggaattcacaagcccaaagatgtaaatcacaagtcgttcttcccagtttagaaata
tcaagcaagaaatgttctatggctggcaataatgaaaaaggtgaagataatctttgcatc
accgtcacacttgttgaaaatccaagggactatatacagctagattttgttcagggctgg
ttcatacctttccttctaggaactgcaataaaaggttgtctggagataacaaaggtagat
atcatatggagtgatcggtcaaaagtatcaaaatctaatagttcttctggtgagctgtac
ttgagggtcactttgtcccatgaccgtggcagtggaagattctggagtacacttgtgaat
cattgccttccaataaggcatctgattgattggacacgtagtcatccagaaaacatacat
catttctgttcagcctatggaatagactcggggtggaaatattttcacaatagtttggaa
tctgcaatctctgataccggcaagataatccttcctaagcatttgcttctagttgctgat
agtctatcagttagtggagaatttgtgggattgaatcctaaaggcatggcacggcaaaga
caacatgcatctgtgtcatcaccctttgtgcaagcatgcttctctaatcctggcagttgc
tttataaaagctgctaaagctggagttagggatgatctccaggggagtctagatgcattg
gcttggggaaactgtccttccatagggacaggtgggcagtttgatataatgtattctaac
aagggatatgaacttgataaacctgttgatgtctacaagttgctagaagtcaatgtggat
gagccgaatcaacagatcaatacttttgaagcacaaatgtatttgtctgacaaatgcagt
gctatgtataaaaagggttgccttgctttaaaggggcttattagaaagttggtgtcagtg
gatgatattctgaagctggctaacaaagcaaagcgcatattaaaagtatattcgccagat
cagcaactaaatgaggtggacaagcaaatcatgaagcaggttttgcactttcatcctcat
tggaataaaaagattggcaatggagtaagggacataaaggttggtcaacatcctatacat
caaaatactcactgtttctttatagtacggaatgatgagtctgttgaggatttttcctac
cgtaaatgcattcataatgctctggagatcattgcaccagcaagggcgaggcggtatgag
gaaaagtggtcgggaagcatgtaa

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