KEGG   Procambarus clarkii (red swamp crayfish): 123763966
Entry
123763966         CDS       T07930                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pcla  Procambarus clarkii (red swamp crayfish)
Pathway
pcla03030  DNA replication
pcla03410  Base excision repair
pcla03420  Nucleotide excision repair
pcla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    123763966
   03410 Base excision repair
    123763966
   03420 Nucleotide excision repair
    123763966
   03430 Mismatch repair
    123763966
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcla03032]
    123763966
   03400 DNA repair and recombination proteins [BR:pcla03400]
    123763966
Enzymes [BR:pcla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     123763966
    6.5.1.6  DNA ligase (ATP or NAD+)
     123763966
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     123763966
DNA replication proteins [BR:pcla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    123763966
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     123763966
DNA repair and recombination proteins [BR:pcla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     123763966
   NER (nucleotide excision repair)
    Other NER factors
     123763966
   MMR (mismatch excision repair)
    Other MMR factors
     123763966
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 123763966
NCBI-ProteinID: XP_045607303
LinkDB
Position
LG38:6226809..6263992
AA seq 1264 aa
MVQKTILSFFSAPKAKKPDGATSVGSSNGNKNGKENSTEAQDSPIKKKPRHKARVIESDS
EEEEQEPSTSSPHKSDDEKENKTKDSAQQTLSKAEERSKKSQTKKKPTINPSAKKEINTK
QKKKDKEDLKSKKSPATKKDKITKEVKKTISKKEGSSLSKNKKGTDAVEEEEDNVKKVLK
TTDDDDHEEVCASPDSNEEETSTTTEKTAKVEELDETMETGDGEDGNIEDKTHDEIVDTP
KKGKNVGRTKKGKNDDGTPKKGKNDDSLRKGKKDDRTQKKGKNEDGTPKKDKNEDGTPKK
DKNEDDTPKKDKNEDGTPKKDKNEDDTPKKDKNEDVTPKKNKNKEGTPKKDKNEDGTPKK
DKNDDDTPEKDKREGEEDKMIVEADSFSTPCKPSTSSQSSSPGFTPETVPPLRKTARKQL
KRKSDSLESKQKSLVKKLKGEDGTSSMSSKDSSEDDVKSENEKVESLKDEIKKENSDDSE
EPMEVDCIDECDSSSKVLNKPTATSSRPKATAIHSFFTKTTRKPSATSVSPKKSTRSPEK
VTQNSSSQDSESCLDEGDTTEEEHCSSPQKKDKSQKKDSPPESDSSDPREKKPLINPFAP
KVSGAGDLGGSYNPKKEKYHPIKDAFWKAQEKVPYLALAKTMELIENTSGRLKTIEILAN
FFRSVIVLTPDDLLHCVYLCLNKVAPSFEGIELGIGETILMRAIAQSSGRSVEKIKLDAE
QKGDLGIVAEQSRSNQRVMFQPANLTVRGVFEKLKEIALMTGTASQSKKIDKIKGMFVAC
RLSEARYLIRSLSGKLRIGLAEQSVLQALAQACFLTPPGQTYPPEVIDAGKKMAPDKLKA
KLDNYGLILKTTYCEFPSYDKIIPVLLNEGLEELPNHCQLTPGIPLKPMLAHPTSGVSEV
LKRFDNAKFTCEFKYDGERAQIHLKEDGSISIYSRNQEDNTTKYPDIIARLKSALGEEVK
SCVIDSEAVAWDREKKQILPFQVLSTRKRKDATESEIKVQVCVFPFDLLYLNGKPLVTEP
FERRRALLQENFKEVEGEFVFAKSMDSTNTEDIEEFLEESIKGNCEGLMIKTLDVDATYE
IAKRSHNWLKLKKDYLDGVGDTIDVVVIGGYTGRGKRVGQYGGFLLACYDQDNEEYQTLC
KIGTGFTDEDLQTHTTFFKDHIIDKPKSYYRYENSIAPDHWFEPVQVWEIKCADLSISPV
HKAASGIVDPEKGISLRFPRFLRIREDKNPEDATSAAQIAELYNSQDQIKNKKSSGKTVE
EDFY
NT seq 3795 nt   +upstreamnt  +downstreamnt
atggtacaaaagacgatattatcattcttctctgccccaaaggcaaaaaagccagatgga
gcaacatccgtgggaagttctaatgggaataaaaatggaaaggaaaactccactgaggct
caagattcccccatcaagaaaaagccacgtcacaaggcacgggtaattgagagcgacagt
gaagaggaggagcaggaaccctctacgagttctccacataagtctgatgacgagaaggaa
aataaaacaaaagacagcgcacagcaaacactgagtaaggcggaggaaaggagcaagaag
tctcagactaagaaaaagcccaccattaaccccagtgcaaagaaagagattaacacaaaa
cagaaaaaaaaggacaaagaagatcttaagtctaaaaaaagcccagcaacaaagaaggac
aaaataacaaaagaagttaaaaaaactatatcaaaaaaggaagggagctcactatccaaa
aataagaaaggtacagatgcagttgaagaggaggaggataatgtgaagaaagtattgaaa
acaacagatgatgatgaccacgaagaagtgtgtgcgtctccagactcaaatgaggaagag
acatcaacaactacagagaagacagctaaggtagaggaacttgatgaaacaatggagaca
ggtgatggagaagatgggaatattgaagacaaaacacatgatgaaatagttgacacccca
aagaaaggcaagaatgttggcagaacaaagaaaggcaaaaatgatgatgggacccctaag
aaaggtaaaaatgatgactccttgaggaaaggcaaaaaagatgatcgcacccaaaagaaa
ggcaaaaatgaagatggcaccccaaagaaggataaaaatgaagatggtaccccaaagaag
gataaaaatgaagatgacaccccaaagaaggataaaaatgaagatggcaccccaaagaag
gataaaaatgaagatgacaccccaaagaaggataaaaatgaagatgtcaccccaaagaag
aataaaaataaagagggtaccccaaagaaagataaaaatgaagatggcaccccaaaaaaa
gataaaaatgatgatgacaccccagagaaagacaaaagggaaggtgaagaagataaaatg
attgttgaagcagactccttttccactccgtgcaaaccatccacctcatcacagagcagt
tctcctggctttactccagaaactgtcccgcccctccgaaaaactgctcgcaaacaactg
aagcgcaagagtgacagccttgagagcaagcagaaaagtttggtgaagaaattgaaagga
gaagatggaaccagtagcatgtcaagcaaagacagcagtgaagatgatgtaaagtcagaa
aatgaaaaggtagaaagtttgaaagatgaaatcaaaaaggagaattcagatgattcagaa
gagccaatggaggttgattgcattgatgaatgtgatagcagtagcaaggtgctgaacaaa
cctactgccacctccagcagacccaaggcaacagccatacacagttttttcacaaaaaca
actaggaagccctcagctacatcagtgtctcccaagaaatccactcgttcacctgagaaa
gtgacacagaacagctcatcccaagactcagagagttgtttagatgagggagacactaca
gaagaagaacactgttcttctccacagaagaaagataaatcccaaaagaaggattcacca
ccagagagcgactcctcagatcctcgagagaagaagcctttaataaatccttttgctcct
aaagtttctggagcaggtgatttgggtggcagctataacccaaaaaaggagaaatatcac
ccaatcaaggatgctttttggaaggcacaggaaaaggtaccatatctggctctagcgaag
accatggagctcattgagaacactagtggccgactcaaaactattgaaattctggctaat
ttctttcgctctgtgattgtattaacgccagatgatctcttgcactgtgtgtacctgtgt
ctcaacaaagtggctccatcatttgaaggcattgaattgggcataggagagacaatattg
atgcgggccatagctcagtcatcgggaagaagtgtggagaagataaaactcgatgcagaa
caaaagggagatttaggaattgtagccgagcagtcaagatccaaccagagggtcatgttc
caacctgccaacctgactgtccgaggggtgtttgagaaactgaaggaaattgctctcatg
actggcactgcttcacaaagtaagaaaatagacaaaataaaaggaatgtttgtggcttgc
cggttgtctgaagccaggtatcttattcgctcccttagtggaaagctgcgcattgggttg
gcagagcagtctgtacttcaggctttagctcaggcgtgcttcctgaccccaccaggacaa
acgtatcccccagaagttattgatgctggcaagaagatggcgcctgacaagttgaaagcg
aagcttgacaactatggcttgattttaaaaacaacgtattgcgagtttccttcttacgac
aaaattatcccagtgcttctaaatgaaggcctagaggagctccctaaccactgtcagttg
acaccaggcatcccattgaagcctatgctggctcaccctacatcaggggtgtcagaagtt
ctgaaacgctttgataatgccaagttcacgtgtgaattcaagtacgatggagaaagagca
cagatccatttaaaggaggatggttcgataagtatttacagccggaatcaggaagacaac
acaactaagtatcctgacattattgctcgacttaagagcgcgcttggagaggaggtgaag
tcatgtgttattgactcagaagctgtagcatgggatcgggaaaagaaacagattctgccc
ttccaagtacttagcactcgaaagagaaaagatgccactgaaagtgagattaaagtgcaa
gtgtgtgtgtttccttttgacttgctgtacttgaatggcaagcctctggtaactgaaccc
ttcgagcgccgtagggcattattacaagaaaattttaaggaggtggaaggagagtttgtg
tttgccaaaagcatggattcaacaaacactgaagatattgaggaattccttgaggaatct
attaaaggaaattgtgaaggtctgatgatcaagacacttgacgttgatgctacatacgag
atagcaaagcgctctcataattggctcaagctgaaaaaggattaccttgatggggttgga
gatacaatagatgtagtagtaattggaggctacacaggaagaggcaagcgtgtcggccag
tatggaggtttcctcttggcttgttatgatcaagacaatgaagaatatcaaacactttgt
aagattggaactggtttcacagacgaagatctgcaaactcacacaactttcttcaaggat
cacattatagataagccaaagtcttactatagatatgaaaacagcatcgcaccggaccat
tggttcgaacctgtgcaagtgtgggagataaaatgtgccgatctctctatatccccagtt
cacaaggctgcttccggcattgttgatccagaaaagggtatatctttgaggttcccaaga
tttttacgtatcagagaggacaagaatcccgaggatgccacaagtgcagcgcaaattgca
gagctttacaatagccaagaccagataaagaataaaaagtcatcaggaaaaaccgtggaa
gaagacttttattga

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