Procambarus clarkii (red swamp crayfish): 123764801
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Entry
123764801 CDS
T07930
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
pcla
Procambarus clarkii (red swamp crayfish)
Pathway
pcla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123764801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcla03400
]
123764801
DNA repair and recombination proteins [BR:
pcla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123764801
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
123764801
NCBI-ProteinID:
XP_045608905
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Position
LG41:9270734..9299392
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AA seq
1316 aa
AA seq
DB search
MVGRRGQCWQQEQYRESPAPLLLREHRYSGLTMSKQASIFTFFSKSPGQNKSQHKGSPKN
TVKLKGNDIASMDMVWAKLDGHPWWPALVCENPGDKSFLRNGQIHVQFFDNPPSRGWVKE
GFVKPYCLPGKNGIPTYKDPTWLKAIEEAKGAEQLSKEDRTLLLVEMLPSDEEPMEDDEE
DTDVSKENVDLNISKNKNNSSKKAMNGEPETKRRRIILHSDSESEDDYKPGKDDVESDEE
SHSSAVDENEISEPEIVSDIDSPVKAPSNKRKKPAASSRCNLNSSLSSSPSTSKTPARAP
STPKISDGTKSKLSLFAAKETPSQVQESSEDWPFLKYPWLQPENIRDREKRSPNHKDYNP
RTLYVPESFLNQQTPALRQWWDIKSQHYDTVLFFKMGKFYELFNMDATLGVQELGLIMMK
GEKAHVGFPEIAYGRYSSTLIDKGYKVARIEQTETPEMMEKRCKTLSRPSKFDRVVRREV
CQISSKGTRVYSFLDGEASEISTSYLLALTERPVRGTGDGSEFGVAFIDTSLGIFHVGQF
TDDRHVSRLSTLMAHYPPAQILFERGRLSQKTQKLVNSAVPSSLRENLAPEKEFWTASKT
LSFLAEGNYFKDKEGDSKIRWPRTLKKMMDDSNSLGTTACPEYELAVSALGALTYYLMDC
CLEEQLLTIRKFEEYNPLDAMTPTGDKKSPSIPAFISGRHHMVLDGMTLGNLEVFENTSG
GTEGTLFDKLDCCSTPFGKRLLRKWICAPLCNPKSISSRLDAIEDLQKNPDVVEEVTALL
KSLPDLERVLARIHSQGLNLSSKHPDSRAIFFEDVKYNKKKVVDFLSGLNGFKTTLQILK
AFKGISSTLQSSLLRKCVTKTKDGGNFPSLSDALQFFDNAFDHEEAQKEGKIIPSSGVDT
EYDGACEQIKITKDKLSDYLKDQCRYFGTKVMYWGNDKKRYQLEVPEHVCRKAGNEYELL
SQKKGYKRFGTPTTKEFLADMITAEEHRDAALNDIARRIFHQFDEHHKKWEAVVQCVSVL
DVLISLLRYSEAANTVKPEIIMPEDSVQPFLEIRDGLHPCVTATFSGDEFIPNDLVVSGD
SKDAHCPMVLVTGPNMGGKSTLMRQTALICLMAQLGSFVPASSCRLTPIDRVFTRLGASD
RIMMGESTFFVELAETSSIIQHATQHSLVLVDELGRGTATYDGTAIASAVVDALVERKCR
TLFSTHYHSLVDDFANVKHVSLGHMACMVEGENEDDPSQETITFLYKFAKGACPKSYGFN
AARLADLPEEVIRRGSQKACDFEKFNLKKQTFSKVFKTKFQMKNLRETVQKIRNLQ
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggttggtagacgtgggcagtgttggcagcaagagcaataccgcgaaagtcccgcgccg
ctgctgctccgtgagcaccgctactcgggattaacaatgtcgaaacaggcttctattttc
acattcttctctaaatcccctgggcagaataagagccaacataaggggtcaccgaagaac
actgtcaagttaaaggggaatgatattgcatcaatggacatggtctgggcaaagttggat
gggcacccatggtggcctgcacttgtgtgtgagaacccaggggataaatctttccttcgg
aatggtcagatacatgtacagttttttgacaacccaccttctcgaggatgggttaaggag
gggttcgtgaagccatactgtttaccaggaaaaaatggtatcccaacatacaaggatcca
acatggcttaaggctatagaggaagctaagggagcagagcagctgtccaaagaagatagg
actttgttacttgttgagatgcttccttcagatgaggaaccaatggaagatgatgaggaa
gatactgatgtaagtaaagaaaatgttgaccttaatataagcaagaacaaaaataacagc
agtaaaaaagctatgaatggcgagcccgagacgaagcgaagaaggataattctccattca
gactctgaatccgaggatgactacaagccaggaaaggatgatgttgaaagtgatgaagaa
tcacatagttctgcagtggatgaaaatgaaatatcagagcccgaaattgtgtcagacata
gattctcctgtcaaggcaccttcaaataagcgcaaaaagccagcagcatcaagtcgatgc
aatttgaattcatccctttcatcttctccatcgacgtcaaaaactccggcacgtgcgcct
tcaactccaaaaatatctgatggcaccaaatccaagctatcattgtttgctgctaaggag
actccttcacaagtccaggaaagctcagaagactggcctttcctgaagtatccttggttg
caaccggagaacatacgtgaccgggagaagcgttcacctaaccataaggattataatcca
aggactctttatgttccagaaagctttcttaatcagcagactccagccttgagacagtgg
tgggatataaagtctcagcattatgatactgttttgttcttcaagatgggcaagttttat
gagctatttaacatggatgccacactgggagtgcaggagttgggccttattatgatgaag
ggagaaaaggctcatgtaggctttccagaaattgcatatggacgttattcctcaactttg
atagacaagggctataaagttgcacgaattgaacagacagaaactccagaaatgatggag
aagcgttgcaaaactttgagtcgtccatcaaagtttgaccgtgttgtgcgacgtgaagtg
tgccaaattagtagtaaaggaactcgcgtgtacagcttcttggatggagaagcctcagaa
atctctacctcctacctcttggctcttactgaaaggcctgtccgaggaactggcgatggc
agcgagtttggtgttgccttcattgataccagcttaggaatatttcatgtgggccagttc
acagatgaccgtcatgtgtcacggttgagcactttaatggctcattatccgccagctcag
attctcttcgaacgagggcgactttcacaaaaaacacaaaaattagtaaattcagccgtg
ccttcaagtttacgagagaatctagctccagagaaggagttctggacagccagcaagacc
cttagcttccttgcagaaggaaattacttcaaagataaggaaggcgattccaaaataagg
tggcctcgaactctgaaaaaaatgatggatgacagtaactcgttgggcactacagcttgc
cctgagtatgagcttgcggtgtctgctcttggtgcactcacgtattatcttatggactgc
tgtctggaggaacagctactcacaattcgcaagtttgaagaatacaaccctcttgatgca
atgactccaacgggagacaagaaaagcccatctattcctgcattcatcagtggaaggcat
catatggtgcttgatgggatgacacttggcaacttagaggtatttgagaatacttcaggt
ggtactgagggaactctctttgacaagttggactgctgctcaactccatttgggaagaga
ttgcttcgtaagtggatttgtgctcctctctgtaatccaaaaagcatcagtagccgttta
gatgctatagaagatctgcaaaaaaatcctgatgtagtggaggaggtaacagccctcctc
aagagtttgcctgatctagagagggttcttgccagaatccactctcagggcttgaacctt
agctcaaagcacccagatagtagagctatattttttgaagatgtcaaatataataaaaag
aaagtggttgactttctttctggactaaatggatttaaaactactcttcaaattctgaaa
gcttttaaaggcattagctctactctccagtcgagtttgctgcgcaaatgtgtgacgaaa
acgaaagatggcgggaattttccaagtttaagtgatgctttacagttctttgataacgct
tttgatcacgaagaggcacagaaggaaggtaagataatccctagcagcggtgttgatact
gaatatgatggagcctgcgagcaaatcaagataacgaaagataaactttcagattatctc
aaggatcaatgcagatattttggtaccaaggtaatgtactggggtaatgataagaagaga
tatcaactggaagtgccagagcatgtatgtagaaaagctggtaacgaatatgagttactg
agccaaaagaaaggttataagcgattcggtacaccaaccactaaagaattcttggcagac
atgattactgcagaggaacaccgtgatgcagcgcttaatgatattgcacgtaggatattc
catcaatttgacgaacatcataagaaatgggaagcagttgtgcagtgtgtatcagtacta
gatgtcctgatctctctattacgttattctgaggctgctaatactgttaaaccagaaatc
atcatgccagaagatagtgttcagcctttcttagagatcagagatggccttcatccatgc
gtgacggcaacatttagcggggatgaatttattcctaacgatttggtggtgagtggtgac
agcaaagatgctcattgtcccatggtgctggtcacaggaccaaacatgggtggcaaatca
acacttatgagacagactgctcttatatgtcttatggcccagttgggatcatttgtccct
gcaagctcatgccgactgacaccaatagatcgagtgtttaccagacttggtgcatctgat
cggattatgatgggggaatcaacattctttgttgagctggcagagacttcttccattatc
caacatgctacccaacattcacttgttttagtagatgaactagggcgtggtacagcaacc
tatgatggtactgcaatagcatctgcggtagtggatgcactggttgagcgtaaatgtcga
acactcttttcaactcattatcactccttagttgatgactttgccaatgtaaaacatgtt
tctcttggtcatatggcatgtatggtggaaggggaaaacgaagatgatccatcacaagaa
acaattactttcctttacaaatttgctaaaggtgcatgcccaaaatcctatgggttcaat
gctgcacgtttggctgacctacctgaagaagttatacgccggggtagtcagaaagcatgc
gactttgagaaattcaaccttaaaaagcaaactttttcaaaggtattcaaaacaaagttt
caaatgaaaaacttaagagaaactgttcagaagattcgtaatttgcagtga
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