Polynucleobacter corsicus: C2747_07960
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Entry
C2747_07960 CDS
T08334
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
pcos
Polynucleobacter corsicus
Pathway
pcos00540
Lipopolysaccharide biosynthesis
pcos01100
Metabolic pathways
pcos01250
Biosynthesis of nucleotide sugars
Module
pcos_M00064
ADP-L-glycero-D-manno-heptose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pcos00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
C2747_07960 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pcos01005
]
C2747_07960 (rfaD)
Enzymes [BR:
pcos01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
C2747_07960 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
pcos01005
]
Core region
C2747_07960 (rfaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
KR
ThiF
adh_short
DapB_N
Motif
Other DBs
NCBI-ProteinID:
QWE18223
LinkDB
All DBs
Position
complement(1537944..1538963)
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AA seq
339 aa
AA seq
DB search
MTIIVTGAAGFIGANIVQALNARGEKNIIAVDDLRPADKYRNLADLDIIDYLDKDEFLEA
FRSGRFGKVRAVFHEGACSDTMETDGIFMMANNFRYTMDLLDICTEQKVQLLYASSAATY
GGSDVFVESREHEKPLNIYGYSKFLFDQVMRKRFAEKANTAQVVGFRYFNVYGPRESHKG
RMASVAFHQYHQYKANGKVKLFGEYGGYGAGEQSRDFVSVEDVVKVNLHFLDHPEISGIF
NLGSGRAQPFNDVAHAVANAMRKIDNANPASLEELVKEKAIEYIPFPDALKGKYQCFTQA
DLTKLRAAGYSEPFLNVEQGVSRYIAWLSANADFLASPL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgacgattatcgtgaccggcgcagctgggtttattggtgccaatattgttcaggcgctc
aatgcccgtggcgagaaaaatattattgcggtcgatgatttacgcccggccgataaatat
cgcaatctagcagatctagacatcattgattacctcgataaagacgagtttctggaagca
tttagaagtggtcgctttggtaaggtgagagcagtctttcatgaaggcgcttgctccgat
acgatggagacggatggcatcttcatgatggcaaataatttccgttacaccatggattta
ctcgatatctgcacagagcaaaaagtgcaattactctatgcctcttcagcagcaacctat
ggtggttctgatgtgtttgtagagagtcgtgagcatgagaagccgttgaacatctatggc
tactccaagttcctattcgatcaagtgatgcgcaagcgctttgctgaaaaagccaacact
gcacaagtggttggtttccgctacttcaatgtctatggaccacgtgaatcacacaaaggt
cgtatggcttcagtggcattccaccagtatcaccagtacaaagccaacggcaaagttaag
ctgtttggtgagtatggaggctatggcgcaggggaacaaagccgcgactttgtatcagta
gaagacgtagtgaaagtgaatttgcacttcttggatcatccagaaattagcgggatcttc
aatcttggtagtggccgcgcgcaaccatttaatgatgtggctcatgcggtagccaatgcc
atgcgtaaaattgataatgccaatcctgcgagcctagaagagttggttaaagaaaaagcg
attgagtacatcccattcccagatgcgcttaaaggtaagtaccagtgcttcacgcaagca
gatttaactaagctgcgtgctgctggctactcagagcccttcctcaatgtagagcagggt
gtcagtcgttatattgcctggctatcagccaatgcagattttttggcaagccctctctag
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