Porphyromonas crevioricanis: NCTC12858_00198
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Entry
NCTC12858_00198 CDS
T05510
Symbol
ribD_1
Name
(GenBank) Riboflavin biosynthesis protein RibD
KO
K01493
dCMP deaminase [EC:
3.5.4.12
]
Organism
pcre
Porphyromonas crevioricanis
Pathway
pcre00240
Pyrimidine metabolism
pcre01100
Metabolic pathways
pcre01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
pcre00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
NCTC12858_00198 (ribD_1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pcre02044
]
NCTC12858_00198 (ribD_1)
Enzymes [BR:
pcre01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.12 dCMP deaminase
NCTC12858_00198 (ribD_1)
Secretion system [BR:
pcre02044
]
Type II secretion system
Competence-related DNA transformation transporter (DNA-T) core components
NCTC12858_00198 (ribD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dCMP_cyt_deam_1
MafB19-deam
APOBEC_N
APOBEC3
SNAD4
Bd3614-deam
APOBEC2
APOBEC4_like
NAD1
NAD2
Motif
Other DBs
NCBI-ProteinID:
SQH72384
UniProt:
A0A0A2FUD2
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All DBs
Position
1:complement(202904..203323)
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AA seq
139 aa
AA seq
DB search
MDKNTELDKRYLRMAAIWAENSYCERRKVGALIVKDKRIISDGYNGTPSGFENICEDESG
ATKPYVLHAEANAITKVAGSTNDSRGATIYITDSPCIECAKLIIQCGIRRVVYAKEYRLS
DGIELLQRAGIQVDFLPMP
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaataccgaactcgacaaacgctacctgcgaatggcagctatttgggcggag
aactcctattgcgaaaggcgcaaggtgggagcactcatagtgaaagacaagcgtattatt
tccgatggttacaatggtaccccttccggctttgaaaatatttgcgaagacgagagtgga
gccaccaaaccctatgtgcttcatgccgaagctaatgccataacgaaagtggctggatcg
accaatgacagtcgcggggctactatatacatcacggactcaccctgtatagagtgtgca
aaactgattattcagtgtggaatcaggcgggtggtatatgccaaggaataccgtctttcc
gatggtatagagctgctgcaaagagccgggatacaagtcgattttctgccaatgccttaa
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