Candidatus Protochlamydia amoebophila: PC_RS01080
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Entry
PC_RS01080 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Pathway
pcu03030
DNA replication
pcu03410
Base excision repair
pcu03420
Nucleotide excision repair
pcu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PC_RS01080
03410 Base excision repair
PC_RS01080
03420 Nucleotide excision repair
PC_RS01080
03440 Homologous recombination
PC_RS01080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcu03032
]
PC_RS01080
03400 DNA repair and recombination proteins [BR:
pcu03400
]
PC_RS01080
Enzymes [BR:
pcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PC_RS01080
DNA replication proteins [BR:
pcu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PC_RS01080
DNA repair and recombination proteins [BR:
pcu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PC_RS01080
NER (nucleotide excision repair)
GGR (global genome repair) factors
PC_RS01080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
XPG_N
TetR_C_10
Motif
Other DBs
NCBI-ProteinID:
CAF22947
UniProt:
Q6MEQ2
LinkDB
All DBs
Position
complement(315596..318271)
Genome browser
AA seq
891 aa
AA seq
DB search
MDKLYILDASGYIYRSYFAIRQMTNARGESTNALFGFIRSVLKLIKDFNPTHLVAVFDGP
NNSQKRTELYPAYKAHRKEMPKDLLYQILWSQRFCQLMGIPELMVPGVEADDTMGSIAKW
AATLNTTAYICTSDKDMCQLVSNQILILNTFKDNLIIDANGVKEQFGVMPAQMIDYLAII
GDASDNIPGLTGFGPKTAADLLEKFGSLDYILEHPLEVSGKKKQDTLISEKEKVLLSKKL
VIVDTTVSFPNQEDFFKLTSPAYQSLKEFYAEMNFSSLIRELEAVKSGISFSDLESQNEV
VYQLVNDEETLVNLISYLSQQKEICLDTETTDLRPLEAQLVGIGLGVEPKKAWYIPLNGQ
LNGDFVLSQLKPLLENPSIGFYGHNFKYDYHVLRNHNISVANISFDTILASYLLNSHKRQ
HSLDHLALELFDKVKIAIQELIGKGKNQLNMKNVALDKICHYCCEDVDYTIRLKNILLSQ
LEERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIYALAGE
IFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEYRTLEKLR
STYVNSLPLQVNAKTGRIHCNFNQSMAATGRLSCQDPNLQNIPVRTEVGRQIREAFRPEK
EDWSYLSADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQ
AKAVNFGLIYGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKEFLEACKQSARETGKAV
TMYGRERLLPEIRSQNAMIRATADRFAVNTPIQGTQADLIKMAMLKINKLLIQEKKKGFM
ILQIHDELIFEVPNQELESISHLVKNTMENIINLKVPLIVNIHIGKNWKEC
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggataaactctatattctagatgcctctggctacatttatcgttcttatttcgcgatt
cgacaaatgaccaatgccagaggtgaatctaccaatgctctttttggtttcatccgttca
gttttaaaattaattaaagattttaatccaactcatcttgtagctgtttttgatggacct
aacaactcccaaaaaagaacagaactctatcctgcctacaaggctcatcgaaaagagatg
cctaaagatttgctttaccaaattttatggtcgcaaagattttgtcaactgatggggatt
ccagaattaatggttccaggtgttgaagctgatgatacaatgggcagcattgccaaatgg
gctgcaaccctcaacaccacagcgtatatatgtactagcgataaagatatgtgccaactt
gtcagcaaccaaattttgattttgaacacttttaaggataatttaattattgatgctaat
ggtgtgaaagaacagtttggtgtgatgcctgcacaaatgattgactacttagcaataata
ggagatgcatccgacaacattccaggccttacgggctttggacctaaaactgctgccgac
ttactagaaaaatttggttcattagattatattttagagcatcctttggaagtttcaggc
aaaaaaaaacaagacacgctaatatctgaaaaagaaaaagttttgttaagtaaaaaactt
gttattgtcgatacaactgtttcctttcccaaccaagaagatttttttaaattaacatcc
cctgcttatcaaagcttaaaagaattttacgcggaaatgaatttctcttctttaattcga
gagttggaagctgtaaaaagtgggattagtttttcagacctagagagtcaaaatgaggta
gtttatcagcttgttaatgatgaagaaaccttagttaaccttatttcctatctatcgcag
caaaaagaaatttgtctagatactgaaacaacggatcttcgtcctttagaagcccaactt
gtcggaattggtttaggtgtagaacccaaaaaagcttggtacattcccttgaacgggcaa
ttaaatggtgatttcgttttaagtcaacttaaaccactacttgaaaatccttcaattggt
ttttatggacacaattttaaatacgattatcatgttttaagaaatcacaatatttctgtt
gcaaatataagttttgatacgattttagcctcttatcttctcaattctcataaaagacaa
cattcattagatcatttggctctagaattatttgataaggttaaaatcgctatacaagaa
ttaatcgggaaaggaaaaaaccagcttaacatgaagaatgtggctttagataaaatatgc
cattattgttgtgaagatgtagattataccattagacttaaaaacattttgttatctcaa
ttagaggagcgaaaattaacttctcttttatttgatttagaacttcctttattgtccgtt
cttgcacaaatggaaagaaatgggatttttattgatacggcttatctaaaacatttatcc
cagtttattgggcaagaaattcattgcttagaacaaaatatttatgcgttagcaggagaa
atttttaacctcaactctcccaaacaactcagtcaaattttatttcataaactcggaatc
aaaccccctaaaaaaattgccacaggtcactcaacaaatgcggaagttctagaaattctc
aaacatgtttatccaattgccgaaaaacttcttgaatatcggactttagaaaaacttcgc
tcaacttatgttaactcattaccccttcaagttaacgctaaaactggacgtattcactgt
aattttaatcagtctatggcagcaacaggtcgactgtcttgccaagacccaaatttacaa
aatattcctgtccgcactgaagtcggtcgtcaaattagagaggcatttcgacctgaaaaa
gaagattggagctatttgtcagcagactattctcaaattgaacttcgtttgcttgctcac
ttaagcgaagatcctgtgctaatcaaagctttcttatccaatgaagatattcacaaatat
accgcttctttaatttttgatgttcctcttcaacaagtttcctctgaacaacgttatcaa
gctaaagcggttaattttggtttgatttatggacaacaagcgtttggcttagctcatgaa
ctaggaattgatacaaaaactgctgctgcttttattcaacgttattttgagcgttatgga
aaggtcaaagaatttttagaagcttgcaaacaatcagcaagagagactggcaaggctgta
acaatgtatgggagggaaagactgcttccagaaattagaagtcagaatgccatgattcga
gcaacagcagatcgatttgcagtaaatacccctatccaagggacgcaagctgatttgatt
aaaatggccatgctaaaaatcaataaacttcttatacaagaaaagaaaaaaggatttatg
attttacaaattcatgatgaacttatttttgaggttcccaatcaagagttagaatccatt
tctcatttagttaagaataccatggaaaatattataaatctaaaggtaccgttgattgtt
aatatccatattggcaaaaattggaaagaatgttaa
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