KEGG   Psilocybe cubensis (magic mushroom): JR316_0012894
Entry
JR316_0012894     CDS       T08288                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pcub  Psilocybe cubensis (magic mushroom)
Pathway
pcub03020  RNA polymerase
pcub03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pcub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JR316_0012894
  09124 Replication and repair
   03420 Nucleotide excision repair
    JR316_0012894
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcub03021]
    JR316_0012894
   03400 DNA repair and recombination proteins [BR:pcub03400]
    JR316_0012894
Transcription machinery [BR:pcub03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     JR316_0012894
DNA repair and recombination proteins [BR:pcub03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      JR316_0012894
SSDB
Motif
Pfam: RNA_POL_M_15KD TFIIS_C GFA C1_1 Zn_Tnp_IS1595 Zn_Tnp_IS1
Other DBs
NCBI-GeneID: 71979214
NCBI-ProteinID: XP_047742060
LinkDB
Position
13:complement(500464..501444)
AA seq 143 aa
MLCEYSKASLHFCQECNNLLYPKADPQRRIMVYGCRICQYDDMVENKCVYRNDLLTVTKE
QVGVTTDLGADATLAHSNIPCPKCGNDDAVFYQDQSKRKETRMILFFYIGVHDYNAVVIT
VYFVNICYPSKFQRHFPVRHCEI
NT seq 432 nt   +upstreamnt  +downstreamnt
atgctgtgtgaatattcaaaggcatcccttcacttttgtcaagaatgcaacaacctactt
taccccaaggcggaccctcagcgtcggatcatggtctatggctgcaggatatgtcaatac
gatgacatggtggagaataagtgcgtctacagaaatgacttgttgacagtgaccaaggaa
caggtcggtgtcaccaccgaccttggggctgacgctaccctggcacattcaaacattcca
tgtccaaaatgtggcaacgatgacgcagttttttatcaagatcaatccaaacgaaaagag
acacgaatgattctattcttttacattggagttcatgattacaatgcggtggtaataact
gtatactttgtcaatatttgctatccctccaaatttcaacgacactttcctgttcgccat
tgtgaaatctaa

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