Phoenix dactylifera (date palm): 103715035
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Entry
103715035 CDS
T03274
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103715035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pda03400
]
103715035
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103715035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
103715035
NCBI-ProteinID:
XP_038987618
UniProt:
A0A8B9AUS3
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Position
11:13551376..13590582
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AA seq
938 aa
AA seq
DB search
MRYTNPTKAAKCRRSSSMGFYVQGEQPHCGFPEKNFAMNLEKLARKGYRVLVVEQTETPE
QLELRRKEMGSKDKVVKREICAMVTKGTLTDGESLLANPDTSYLMSITENCQCFENHKKG
ETIIGLCVVDVSTSKFMIGQFEDDSDRHCLCSILSELRPVEIIKPSKVLSPETERVLRNN
TRNPLVNDLVPFTEFWDAEKAIGEVRKYYSLSRKLPASANDSISANFENPASDSLALPYV
FAELVSAGDDGLYALSAFGGCLFYLRQAFLDETLLNCAKFEPLPCSGFFSTIQNSYMILD
AAALENLEILENNRNGGPSGTLFAQLDHCMTAFGKRLLKRWLARPLYNTRSIVERQDAIA
AMKGVGLAFALEFRKELSRLPDMERLLARLFASCGANGRNSNRVVLYEDAAKKQLREFIA
ALRGCQLMVQACSSLSPILSTTESSLLHHLLTPGKGLPDMCSLVSHFKDAFDWSEADCSG
RIIPHEGGDVEYDLACKRVKEIESALTRYLKEQRKLLGDASINYVTVGKDMYLLEVPESL
RGAVPSDYELQSSKKGYFRYWTPKIKEFLSEHSQAEADKESKLKGILQRLIKYFSEHHSK
WRQLVSATAELDVLISLAIASDYYEGPACRPFIMEICHSDDKLPFLSAKSLGHPILQSDA
LGKGSFVPNDVSIGGAGRANFILLTGPNMGGKSTLLRQVCLSVILAQIGADVPAESFKLS
PVDRIFVRMGARDHIIAGQSTFLMELSETASMLSSATQNSLVALDELGRGTSTSDGQAIA
ASVLEYLVHRIQCRGLFSTHYHRLAVEYEKDAKVSLCHMACQVGKGVSGLEEVTFLYRLT
PGSCPKSYGVNVARLAGIPASVLQTAMAKSREFEAGYGKREYESEGELPDPMKDGEVVVI
KDLLCITERWNCQKDFRAINLNLLSEMQKRARVLVLES
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgagatatacaaatcctacaaaagctgcaaaatgtagaagaagctccagcatgggcttt
tatgtccagggagaacagcctcattgtgggtttcctgaaaagaattttgcgatgaatttg
gagaaattggctagaaagggttaccgggttcttgttgtggaacagacagagacacctgag
cagcttgaacttcgtcgtaaagagatggggtctaaagataaggtcgtgaaacgggaaata
tgtgctatggtcacaaaaggaacactaactgatggagagtcactattggcaaatcctgac
acttcttacctaatgtcaattactgaaaattgccaatgttttgagaaccacaagaaagga
gagacaattataggtctttgtgtggttgatgtttccacaagcaagttcatgataggacag
ttcgaagatgattcagatcgccactgcttatgctcaatattatctgaactaaggcctgtc
gaaatcataaagccttctaaagtgctcagtcctgaaactgagagagtcttgaggaacaat
acaagaaaccctttagttaatgatttggttccttttacagaattttgggatgctgagaaa
gctattggtgaggtcagaaaatattatagtctatcaaggaagctaccagcatcagcaaat
gacagcatttctgctaattttgagaatccggcgagtgattcattggccttaccatatgtg
tttgctgagctggtgagtgcaggtgatgatggattgtatgccctttctgcttttggaggc
tgccttttttatttaaggcaggcattcctggatgaaacattgcttaactgtgctaaattt
gagccacttccatgctcggggtttttcagcactattcagaattcatatatgatacttgat
gcagcagcacttgagaacctagagatattggagaataacagaaatggaggtccctcaggg
acactctttgcacagttggatcattgcatgacagcatttggcaaaagattgcttaaacga
tggcttgctagaccactgtataatacaaggtcaattgtagaacgtcaagatgccatagca
gctatgaagggcgttggtcttgcatttgcgcttgaatttcgaaaagaattatcaaggctt
ccagacatggaacgtttgcttgcacgcctctttgctagctgtggggctaatggaagaaat
tccaatagagtggttctttacgaggatgcagcaaagaagcaactccgagaatttattgct
gctctccgtggttgccaattaatggtccaagcatgttcttcccttagtcctatactgagc
actacagaatctagtctgctccatcatttgttaacaccaggcaaagggcttccagacatg
tgctcacttgttagtcatttcaaggatgcctttgattggtcagaagctgattgcagtggg
cgcattatacctcatgaaggaggtgatgtcgaatatgatcttgcatgtaaaagagtgaaa
gagattgaatctgctctgacaaggtacctgaaggagcaacgcaagctgctaggagatgca
tcgataaactatgtcactgttgggaaagacatgtatctacttgaggttcctgagagcttg
aggggtgctgttcctagcgactatgagttacaatcatcaaagaaggggtacttcagatac
tggacaccaaaaataaaggagttcttgtcagaacattctcaagctgaggcagataaagaa
tctaagctgaaaggcattcttcagaggttgatcaagtatttcagtgagcatcatagcaag
tggagacagttggtttctgcaactgcagagctagatgttttaataagcctggcaattgca
agtgactattatgagggaccagcatgccgcccattcattatggaaatatgccattcagat
gacaaacttccatttttgtctgctaaaagtctgggacatccaattctccaaagtgatgcc
ttaggcaagggttcttttgtgcccaatgatgtaagtattggtggggcagggcgtgccaac
tttatccttctcacaggtccaaatatgggtggtaagtcaactctacttcgccaagtctgc
ctgtctgtgattttggcacagattggagcagatgtccctgcagaaagctttaagctctct
cctgtcgatcgcatctttgttcgaatgggtgcaagagatcacattattgctggccaaagt
acattcttgatggaactttcagagactgcttcaatgctgtcttctgccacccaaaattct
ctagtggcattagatgagcttgggcggggcacatcaacttctgatggacaagctattgct
gcatctgttttagaatatcttgttcatcggatacagtgccgaggcttgttttctactcat
tatcatcgattggccgtagaatatgagaaagatgctaaggtgtcactgtgtcatatggct
tgccaagttggaaagggagttagcggattggaagaagttacttttctttatagactgact
cctggttcatgccccaaaagctatggtgttaatgttgctcgtttggctggaatacctgcc
tctgtgttgcaaactgccatggcaaaatcgcgtgaatttgaagcaggttatgggaagcgc
gagtatgaaagtgaaggtgagcttccagatccaatgaaggatggtgaagtagttgttatc
aaggacctgctttgtattactgagagatggaactgccaaaaggatttccgcgccataaat
ttaaatttactcagtgaaatgcaaaagagagctagggttcttgtgctggaaagctga
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