Pocillopora damicornis (lace coral): 113678428
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Entry
113678428 CDS
T05773
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113678428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113678428
Enzymes [BR:
pdam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113678428
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
113678428
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF1639
Motif
Other DBs
NCBI-GeneID:
113678428
NCBI-ProteinID:
XP_027051114
LinkDB
All DBs
Position
Unknown
AA seq
1759 aa
AA seq
DB search
MSVNTEMFGPNAVPFHYLEGLRLALYTPDESEKISVKKLTNPETFDALLHPNFGGLYDPA
LGPTDKDDLCGTCAQNYIYCPGHFGHVELPLPVYHPLFFKELLAILRSSCFRCGDLFFSR
AVMHVFLSQMKVLDYGLITVAEDLQQIAFGTLNCPDPLDNEQQSQPEYMCITAVDEHLRK
ELKNIDRKEARRESTAKNVTDCRHRISKEFMYTHMVNKRRCCPGCQAPSRDVRSEYNSRV
FLKGLSLRDANKWVNTQLANAHLAKHDSLSVTNDANENRDERENTNNSVEDAAKGSDADI
KKLLAQTYLTPLEVRKQIFQIWEKHGGFLSILYGAYPSPTAKRRCCSADMFFIEILPVAP
SRFRPLSKVGGKQFENPQTRNLKKIMEDCVLVRSCLQDLNKPLPDDQDVQIEKRKKSFGK
NALVTVPGKTATERLHNAWLKLQTDVNCYIDSDLDRVSVLKFPGIRQILEKKEGLFRKHM
MGKRVDYACRSVISPDPFLNVDEIGIPEVFALKLTYPQPVTHWNVKQLRQAVINGPLQHP
GATFVENEDGKVTLLSKTDPNQRQAIAKRLLTPSTDIRTLVSPCKKVYRHLQNGDVLLLN
RQPSLHRPSMMAHKARVLPGEKTIRLHYANCKSYNADFDGDEMNAHFPQNELARAEAYHI
ASTNFQYLVPKDGTPLNGLIQDHMVAGVRMTIRGRMFKRSDYQQLVYSAVSFKNRKIKML
RPCIVKPCELWSGKQVISTVLLNLIPEEAKLLSMQGKAKIVGKNWITGKPKEHFLGLFSL
KGDMMSEAEVVVRQGHLLSGVLDKAHYGPTSFGLVHCCHELYGGVVAGYLLTALARVFTT
FLQYQGFTLGVEDILVKEKADNKRHKFIKKGRASGVEATKEALGLFGDCESSTLEQKLQE
AHHNKDGSDMKQLDLSMKKKTDHYQDMINRACIPLGLLKRFPENNLQLMVQSGAKGSSVN
CMQISCLLGQIELEGRRPPLMVSGRSLPSFLPYDSSPRAGGFVDGRFLTGIRPQEYFFHC
MAGREGLVDTAVKTSRSGYLQRCLIKHLEGLLVNYDLTVRDSDSSLVQFYYGEDGLDVMK
TSFLSEKQFPFMASNYKAFLQQMNPKALLPHLQSEEALKLENKINKKMRKQKESHIKRTS
PYHYFAADKCKEIQNRKSSASQLTFGRSETDLKMIERWNEAPLAVRKRYHKESARFPDPV
LSKLQPDRHFGAVSERIFMSVKNYMEGNPDKCLTEYESEESLKLPSSKFKNLIYLKAFRA
LAEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASANIKTPT
MDLPLKPRKRSQKLAKQLQRQLTKVTLAQVLQSVDVWESLPSKTSTGTRERWYRIRFQFL
SELSFKDELIVRSEDVLHHMETVFIKRVIGAVIKAAKVKRGERTIESVNNTEQQRNDRDE
ERSTQPDDDDDDDDDDNADLSDEEAADGDANEAKQRQRRQQHASYEAPDEDEQMVERELD
DSSEDEDSSEATISSRMDATIQDDEDLKYNESKGKRKSRKTDDARIQRVLESDIRIGGYS
YDVKKEEWCEVSLMFPADSFKIQLSSLIEKLAYKSVVYETPHINRCFLIENNDTVVLKTE
GVNIQETWQYEDVLDLTKVYTNDIHAMARVYGIEAAAKVIKKEIKNVFNAYGINVDPRHL
SLISDYMTYEGTIKPFNRLGLESNASPFQKMSFETTTHFLRGAVLSGDTERLVSPSSRLV
VGRVVESGTGCFELLQPLC
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtaaacactgagatgtttgggcctaatgcggttccttttcattatttggaaggt
ctaagactagctttgtatacacctgatgaaagcgaaaaaatcagtgttaaaaagttaacc
aatcctgaaacgtttgatgcgttgttacatccgaattttggaggtctttatgacccagca
ttaggtcctacagataaagatgacttgtgtggaacatgtgcacagaactacatttactgt
cctggacattttggtcatgtcgagcttccattaccagtgtatcatccattatttttcaaa
gagttattagcgattttgcggtcgtcatgtttcaggtgcggagatctttttttttcgaga
gctgtcatgcacgtcttcttaagccagatgaaagtgttagattatgggttaatcacagtt
gctgaagaccttcaacaaattgcctttggtactctgaattgtccagacccccttgataat
gagcagcaaagtcagcctgaatatatgtgcataacagctgtggatgaacatttaagaaag
gagttaaaaaatatagacaggaaagaagccagaagagaatcgactgctaaaaatgtcaca
gattgcagacatcgaattagcaaagagtttatgtatactcacatggttaacaaaagacgc
tgttgtccaggatgtcaagcgccatctcgggatgttagaagtgaatacaacagtcgtgta
tttttaaagggtttatccttgcgagatgcaaataagtgggttaacactcaattggctaat
gcacacttggctaaacatgattcactttcagtgactaatgacgcaaatgaaaatagggat
gagagagagaacacaaacaattcagttgaagatgcagctaaaggaagtgatgctgatatt
aagaaactgttggcacaaacttacctaactccacttgaagtgcgaaaacaaatttttcaa
atttgggagaaacatggtggatttcttagcattctttatggagcatatccatctccaaca
gcaaaacggaggtgctgttctgcagatatgttctttatagagatccttccagtcgcacca
tcaaggtttagacctctttcaaaggttgggggaaaacagtttgagaatccacaaacaaga
aacttaaagaaaatcatggaagactgtgtacttgtcagaagctgccttcaggatttaaac
aaacctctacctgatgatcaagatgtacaaatagaaaagagaaagaaatcttttggaaag
aatgctctagttactgtacctggtaagactgccactgaaagacttcacaatgcttggctc
aaactacaaactgatgtcaactgctatattgacagtgatttggatagagtatctgtcctc
aaattcccaggaatcagacagatactggaaaagaaagagggactgtttagaaagcacatg
atgggaaagagggtggactatgcttgcagatctgtgatttcacctgatccattcctgaat
gtggatgagattggaatcccagaggtgtttgctctgaagttgacatacccacaacctgta
actcactggaatgtcaaacagctaagacaggctgtcattaatggtccacttcaacatcct
ggggcgacctttgttgaaaatgaagatggcaaagtaactcttctcagtaaaactgatccc
aaccaaagacaggcgattgcaaagcgcttgcttacaccatcaactgacataagaactttg
gttagcccttgtaagaaggtctatcgacaccttcagaatggagatgtgttgttgcttaac
agacagccgtcacttcataggccaagtatgatggcacacaaggctcgtgtacttcctggg
gaaaagaccattcgccttcattatgccaactgcaagtcttataatgctgattttgatggt
gatgaaatgaatgctcattttcctcaaaatgaattggctagggctgaagcctaccacata
gccagcacaaattttcagtacttggttccgaaagatggcacaccacttaatggactaatt
caggaccacatggtggccggagtgaggatgaccatccgaggacgcatgtttaagaggtca
gattatcagcagcttgtttatagtgctgttagtttcaagaacaggaagataaagatgcta
aggccttgcattgtcaagccttgtgagctgtggtcaggaaagcaggtcatatctacagtc
ttgcttaacctcattccagaggaagcaaagctactgagtatgcaagggaaagccaagatt
gttggaaaaaattggatcactggtaaacccaaagagcactttcttggattattttcattg
aagggagatatgatgtcggaggcagaggtggtggttcgtcaagggcatttactcagcgga
gtgttggacaaagcgcattatgggcctacttcttttggtttggtgcactgctgccatgag
ttgtatggtggagtagtagctggatatctacttactgctctggccagagtgttcacaact
ttccttcaatatcaaggattcaccctaggtgtagaggacatcctagtcaaggagaaggcg
gacaacaaaaggcacaaatttataaagaaagggagagcatctggagttgaagctacaaaa
gaggctcttggtttgtttggtgactgtgaaagttcaactctggaacaaaagctacaggag
gcccaccataacaaggatggaagtgatatgaaacagcttgacctaagcatgaaaaagaag
acagaccattaccaagacatgatcaacagggcttgcattcccttgggtcttctcaagagg
tttcctgaaaacaatcttcagctgatggttcagtctggggctaagggctcctcagtcaac
tgcatgcagatttcctgcctcttggggcagatagagctggaggggcgccgaccacccctt
atggtcagtggaaggtctttgccctcattcctgccatatgatagcagtccgagggctggg
ggatttgttgatgggcgtttcttgacaggaatcaggccacaggagtatttctttcattgt
atggcaggaagagagggtcttgtggatacagctgtgaaaacaagtcgtagtggctacctt
cagcgctgtctcattaaacacctggaaggtctcctagtcaattatgatcttactgtgcga
gatagtgacagctctcttgtgcagttttattatggtgaagatggcttggatgtcatgaaa
acttcctttctttcggagaagcagtttccctttatggcaagcaactacaaggcttttcta
cagcaaatgaatcccaaagctcttcttccccatcttcagtcagaagaagcactcaagctt
gaaaataagatcaacaaaaagatgaggaaacaaaaagagagtcacattaaaagaacctca
ccgtaccattattttgctgcagacaagtgtaaagaaatacaaaatagaaaatcaagtgct
agtcagcttacgtttgggcgatctgagacagatctcaagatgattgaacgatggaatgaa
gcacccttggctgtgcgcaaaaggtatcataaggaatccgcacgttttcctgaccctgtt
ttgtccaagttacagcccgacagacactttggagctgtttctgagagaattttcatgtct
gtcaagaactatatggaaggaaaccctgacaagtgcttgactgagtacgagtcggaagaa
agtttgaaattaccatccagtaagttcaaaaacctgatatacctgaaagcgttccgtgcc
ttagctgagccaggagaagctgtaggactgttggcagctcagtctattggtgaaccctct
actcaaatgacacttaatacgtttcactttgccggccggggtgagatgaatgtgactctt
ggaattccaagattaagggagattttgatgactgctagtgcaaatatcaaaacccccacc
atggacctccctcttaaaccaaggaagaggtcacagaagcttgctaaacagctgcaaagg
caattaaccaaagttactttggcgcaggtattacaatctgtggatgtgtgggagtcattg
ccatccaaaacttctactggaacacgagaaaggtggtaccgcatcagatttcaatttctt
agcgagttgtcattcaaggatgagttgattgtgagatcagaagacgttcttcaccacatg
gaaacagtttttattaaaagagtcattggggccgtcattaaagccgcgaaagttaaacgt
ggtgaaagaactatcgagtctgtgaataacacagagcagcagagaaatgatagggacgaa
gaaagaagtacccagcctgatgatgacgatgatgacgatgatgatgacaatgctgatctt
tccgatgaagaagctgctgatggtgatgctaatgaagcaaaacagaggcagagacgtcag
cagcatgccagctatgaagccccggatgaggatgaacagatggttgaacgtgaacttgat
gattcctctgaagatgaagatagcagtgaagcaacaatcagctcaagaatggacgcaact
atacaggatgacgaagatttgaaatacaatgaaagtaaaggcaaacggaaatcaaggaag
accgatgatgcgcgaatacagcgtgttttggaaagtgacattcgcattggaggctattct
tacgatgtcaagaaagaagaatggtgtgaagtgtccttgatgtttcctgctgatagtttt
aagatacaactgtcatctctgattgagaaactcgcctataagagtgttgtctatgaaacg
ccgcacataaatcgatgttttttaattgaaaataacgataccgtcgtgctgaaaacagaa
ggagttaatattcaagaaacgtggcaatatgaagacgtattagacttgacaaaggtgtat
actaacgatattcatgctatggcaagggtttatggaattgaagctgcagcaaaagttata
aaaaaggaaataaagaacgtattcaatgcctatggaatcaacgtagatccacgtcacctt
agtctcatatcggactacatgacttacgaagggacaatcaagccatttaatcgccttgga
cttgaatcaaacgcttctccttttcaaaaaatgagttttgaaacgacgacacactttctt
cgtggagcggttctttcaggggacacagaacgtttggtttctccatcttctagactggtc
gttggccgggtcgttgagagtggtacaggatgttttgagctgctgcagccgctctgctaa
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integrated database retrieval system
