Paraburkholderia dioscoreae: PDMSB3_1721.1
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Entry
PDMSB3_1721.1 CDS
T08115
Name
(GenBank) Urea carboxylase
KO
K01941
urea carboxylase [EC:
6.3.4.6
]
Organism
pdio
Paraburkholderia dioscoreae
Pathway
pdio00220
Arginine biosynthesis
pdio00791
Atrazine degradation
pdio01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pdio00001
]
09100 Metabolism
09105 Amino acid metabolism
00220 Arginine biosynthesis
PDMSB3_1721.1
09111 Xenobiotics biodegradation and metabolism
00791 Atrazine degradation
PDMSB3_1721.1
Enzymes [BR:
pdio01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.6 urea carboxylase
PDMSB3_1721.1
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CT_A_B
CPSase_L_D2
Biotin_carb_N
CT_C_D
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
RimK
Biotin_lipoyl_2
ATPgrasp_Ter
Ntox43
DUF2118
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
VVD33005
UniProt:
A0A5Q4YW56
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All DBs
Position
II:complement(1774367..1777984)
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AA seq
1205 aa
AA seq
DB search
MRFRKVLIANRGEIACRVIRTLRRLGIASVAVYSEADRHAMHVMLADEAVCIGQALAAQS
YLNSAAILDAARAYGADAVHPGYGFLSENAAFAQACDDAGIRFIGPTPAQMREFGLKHTA
RELAQANHVALLPGTGLLPDVSTALREADSIGYPVMLKSTAGGGGIGMSLCRDAAQLESV
FASVARLGEANFANAGVYLEKFVENARHIEVQIFGDGRGSVIALGERDCSVQRRNQKVIE
ETPAPGLTHAERSALHASAVRLAQAVKYKSAGTVEFVFDADTRRFYFLEVNTRLQVEHCV
TEEVTGIDLVEWMIREAEGELAPLDTLAPVPHGASIQVRLYAEDPHKQFQPSAGVLTHVA
FAAAARVDTWVDAGTEVSAFYDPLLAKLIVKGETREAALAALRAALEETQLYGIETNLDY
LRAIAGSATFARGEQTTAFLSRFMFAPHTIDVLDGGVQTTVQQTPGRTGYWDIGVPPSGP
MDDLSFRLANELLGNPADAAGLECAMVGATLRFNTATLFVLGGAPLAATLDGAPVTLWQV
TRAPAGSVLKLGGVTGAGMRVCLALKGGLQVPDYLGSKATFTLGQFGGHAGRALRKGDVL
HLADGAGRGEAGAQLDAARVPEMTHDWTLGVLDGPHGAPDFFTADDIAMLYGTRWTVHYN
SSRTGVRLIGPKPQWARTDGGEAGLHPSNIHDNAYAVGAVDFTGDMPVILGPDGPSLGGF
VCPVTVVGEELWKLGQLRPGDTVRFERMPVKAALAAPEHVAQAGDIGHDCILYRDPTAGE
GTGVVYRRSGDQNVLIEYGPLVLDLNLRFRVHALMNWLDAHRLPGIIDLTPGIRSLQVHF
DHRMLSHDTLLAHLQQAERELPAVDEMRVPNRIVHLPLSWDDPSTRIAIERYMQSVRPDA
PWCPSNIEFIRRINGLNSIDDVKRIVFDARYLVMGLGDVYLGAPVATPLDPRHRLVTTKY
NPARTWTPENAVGIGGAYLCVYGMEGPGGYQFVGRTVQMWNRYRTTREFEAGKPWLLRFF
DEIRFYEVSEAELAELRTDFIAGRASLKIEESVFDLGAYNRFLKDEAGSIAAFKSAQQAA
FDAERERWNAAGHAEYVGETDGETDGDAAAGTAANDALSAGQQGIVADVSGSVWKLLVSE
GDRVSDGQAVAIVESMKMEISVTVTGDGVIEAIDCAQGAAVVAGQRLMVMRAGIAADATE
EATCK
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgagattccgcaaagtcctgattgccaatcgcggcgagattgcctgccgcgtgattcgt
acgctcaggcgtctgggcattgcgtcggtcgcggtgtattcggaggccgatcgccacgcc
atgcatgtgatgctcgccgatgaggcggtgtgcatcggccaggcgctcgcggcgcagagc
tatctgaacagcgcggcgattctcgatgccgcgcgcgcttacggcgctgacgccgtgcat
cccggctacggttttctgtccgagaacgccgctttcgcgcaggcttgcgacgacgcgggg
attcgcttcatcggcccgaccccggcgcagatgcgcgagttcggcctgaagcatacggcg
cgtgaactggcgcaagccaaccacgttgcgctgctgccgggcaccggcttgctgcccgac
gtgagcacggcgttgcgcgaggcggactcgatcggctatcccgtgatgctgaaaagcacc
gcgggcggcggcggtatcggcatgtcgctgtgtcgcgacgcggcgcaactggagagcgtg
ttcgcctcggtcgcgcggctcggcgaagccaactttgccaacgccggcgtctacctcgaa
aagttcgtcgagaacgcgcgccatatcgaagtgcagattttcggcgacggccgcggcagc
gtgatcgcccttggcgagcgcgactgctcggtgcagcggcgcaaccagaaggtgattgaa
gaaacgcccgcgcccggattgacgcatgcggaacgcagcgcgctgcatgcgagcgcggtg
cgtcttgcccaggccgtgaagtacaaatccgcaggcacggtcgagttcgttttcgatgcc
gacacgcgccgtttctatttcctcgaagtgaacacgcggctgcaagtcgagcattgcgtg
acggaagaggtcacgggtatcgatctggtggagtggatgattcgcgaggccgagggcgaa
ctcgcgccgctcgacacgctcgctcccgtgccgcatggtgcaagcatccaggtgcgtctg
tatgcggaagacccgcacaagcagtttcaaccgagcgcgggcgtgctgacgcatgtcgcg
ttcgccgccgccgcgcgggtcgacacctgggtcgatgcgggcacggaagtcagtgctttc
tacgatccgttgctcgccaagctcatcgtcaaaggcgaaacgcgcgaggccgcgctcgcg
gcactgcgcgccgcgctggaagaaacgcagctctacggcatcgagaccaatctcgactat
ctgcgcgcgattgccggctcggcgacgtttgcacgcggtgagcagaccacggcgttcctg
tcgcgcttcatgttcgcgccgcacaccatcgacgtgctcgacggcggcgtgcagacaacc
gtgcagcagacgcccggacgcaccggctattgggacatcggcgtgccgccgtcgggtccg
atggacgatctgtcgttccgcctcgccaacgaactgctcggcaatcccgccgatgccgca
gggctcgaatgcgcgatggtcggcgccacgttgcgcttcaataccgcgacgctgttcgtg
ctgggcggcgcgccgctcgctgcgacgctggacggtgcgccggttacgctctggcaggtc
acgcgcgcgcctgcgggttcggtgctcaagctcggcggcgtgacgggcgccggcatgcgg
gtgtgtctcgcactcaagggcggcctgcaagtgccggattatctgggcagcaaggcgact
ttcacgctcggccagttcggcggccatgcggggcgtgcgctgcgcaagggtgacgtgctg
catctcgcggacggagcgggccgtggcgaagcgggcgcgcaactggacgcggcacgcgtg
ccggagatgacgcacgactggacgctcggcgtgctcgacggcccgcatggcgcgcccgat
ttcttcacggccgacgacatcgcgatgctctacggcacccgctggacggtgcactacaac
tccagccgcacgggggtgcgcctgatcggcccgaagccgcaatgggcgcgcacggacggc
ggcgaggcggggctgcatccgtcgaatattcacgacaacgcgtatgcggtcggcgcggtg
gatttcaccggcgacatgcccgtgattctcggccccgacggtccgagtctgggcggtttc
gtatgtccggtcacggtggtgggcgaggagttgtggaagctcgggcaactgcgccccggc
gatacggtgcgcttcgaacgcatgccggtcaaagcggcgctcgccgcgccggagcatgtg
gctcaggccggcgacattggccacgattgcatcctctatcgcgatcccacggcaggcgag
ggcactggcgtggtgtatcgccgctccggcgaccagaacgtgctgatcgaatacggcccg
ctcgtgctcgacctgaacctgcgctttcgcgtgcatgcgttgatgaactggctcgacgcg
caccggctgccgggcatcatcgatctgacgcccggcatccgttcgttgcaggtgcatttc
gaccatcgcatgctgtcgcacgacaccttgctcgcgcatctccagcaagccgagcgcgaa
ctgcccgccgtcgacgagatgcgcgtgccgaaccgcatcgtgcatctgccgctctcctgg
gacgacccgtcgacgcgaatcgcgatcgagcgctacatgcagtcggtgcgtcccgatgca
ccgtggtgtccgagcaatatcgagttcattcgccgcatcaatgggttgaatagcatcgac
gacgtgaagcgcattgtgttcgacgcgcgctacctcgtcatgggcctcggcgacgtctat
ctcggcgcaccggtcgcgacgccgctcgatccgcgccaccggctcgtcaccaccaaatac
aacccggcgcgcacgtggacgccggagaacgcggtgggcatcggcggtgcgtatctgtgc
gtgtatgggatggaagggccgggcggctatcagttcgtcggccgcaccgtgcagatgtgg
aaccgctatcgcaccacgcgcgagttcgaagcgggcaagccctggctgctgcgcttcttc
gacgaaatccgcttctacgaagtcagcgaagcggagctggccgagctgcgcacggatttc
atcgcgggccgcgcgagcctgaagatcgaggagtccgtgttcgacctcggcgcgtacaac
cgcttcctgaaagacgaagccggatcgattgccgcgttcaaaagcgcgcagcaagccgcc
ttcgacgcggagcgcgagcgctggaacgccgccggtcatgccgaatacgtcggcgaaact
gatggcgaaacggatggcgatgcagccgccggcactgcggcgaacgacgcgctttcggcc
ggtcagcaaggcatcgtcgccgacgtgtcgggcagcgtgtggaagctgctcgtgagcgaa
ggcgaccgcgtcagcgacggccaggcggttgcgatcgtcgagtcgatgaagatggaaata
tccgtcaccgtgactggcgacggcgtgattgaagcgatcgattgcgcccagggcgcggcg
gtcgtcgcggggcaacgtttgatggtgatgcgcgccggcattgcagccgacgccaccgag
gaggccacatgcaaatga
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