Prunus dulcis (almond): 117634445
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Entry
117634445 CDS
T07328
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03020
RNA polymerase
pdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117634445
09124 Replication and repair
03420 Nucleotide excision repair
117634445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117634445
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117634445
Enzymes [BR:
pdul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117634445
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117634445
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117634445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
117634445
NCBI-ProteinID:
XP_034224460
LinkDB
All DBs
Position
7:16284928..16294075
Genome browser
AA seq
1844 aa
AA seq
DB search
MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK
FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI
EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ
LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP
GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA
EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSSAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPGSPFTSGVSPDY
SPSSPQYSPSAGYSPSQPGYSPSSTSQYTPQTSEKDTKDDRSTR
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcttcccattctcgccggcggaggttgccaaagtccgctgtgttcagttc
ggcattctgagcccggacgaaataaggcaaatgtctgtagtgcagattgagcacagcgag
accatgttgggaggcaaacccaagacggcaggtttaagtgatcctcggcttggtacaatt
gacagaaaaatgaagtgcgaaacatgtactgccaacatggctgagtgcccgggccatttt
gggcaccttgagcttgccaaaccaatgtttcacattggtttcatgaagaccgtgttgtcc
ataatgcgatgtgtttgcttcaattgctcaaaaattcttgtcgatgaggatgatcacaag
tttaagcaggctttgagaattaagagcccaaaaaataggctaaaaaagattttggatgca
tgcaaaaacaaaaccaaatgtgatggtggtgatgaaattgatgtccaaggccaggaatct
gaagaacctgtaaagaaaagtcgcggcggctgtggtgctcagcagcccaagctctctata
gagggtatgaaaatgaatgcagaatacaaagcccaacggaagaaaagtgatgaccaggaa
cagcttcctgaacctgtggaaaggaaacagacacttactgcagaaagggttcttagtgtc
ttaaaaaggataagtgatgaggactcccagttattgggattgaaccctaaatatgctcgt
cctgactggatgattttacaagttctgcctattcctccacaacctgtgagaccctctgtg
atgatggacacctcatccaggagtgaggatgatttaacacatcagttagccatgattatt
cgtcacaatgagaatctgaggagacaggaaagaaatgggtcacctgctcatataatttca
gagtttgcacaactgttgcaattccacatagccacgtattttgacaatgagttgcctgga
ctaccgagggctactcagagatcagggaggcctattaaatcaatatgtagtaggcttaag
gcaaaggaaggcagaataagaggaaatttaatggggaagcgagttgatttctcggcacga
acggtgattactcctgatccaaacataaacattgatcaattaggagtaccatggagtatt
gctttgaatctcacgtacccagagactgtgactccatataatattgaaaggttgaaggag
cttgttgagaatgggccccatcctccacctggtaaaactggtgcgaagtatataatacga
gatgatgggcaaaggcttgatcttcgttacttgaagaaaagcagtgatcatcatttggag
cttggatataaggtggagcgtcatttgaatgatggagactttgtcctcttcaatcgtcaa
cctagtctccataaaatgtctattatggggcacagaatcaagatcatgccgtactcaact
tttcgcttgaatttgtctgtgacctctccttacaatgccgactttgacggggatgagatg
aacatgcatgttcctcagtcttttgaaactagggcagaagtactggagctcatgatggtg
cccaagtgcatagtgtctcctcagtcaaatcggcccgtgatgggaattgtgcaggatacc
cttttagggtgccgtaagattaccaagagggataccttcatagagaaggatgtttttatg
aatattttgatgtggtgggaggattttgatggaaaagttcctgctcctgcaattttgaag
ccacggccattgtggactggcaagcaagtcttcaatcttataataccaaaacagataaat
ctccaaaggacttctgcatggcactcggaagcagaaagtggcaacattacccccggagat
acttttgttagaatagagaagggggagctacttgctggaacactttgcaagaaggcactt
gggacatctacaggaagtctgatacatgtcatatgggaagaagttggcccagatgcagct
cgcaagttcctgggtcatacccaatggcttgttaactattggctactacaaaatgctttt
agcattggaattggagatacaattgctgatgctgcaacaatggagaaaatcaatgaaaca
atttcaaaggcgaaaaatgaggtgaaagatcttataagtaaagcccaatccaagcagctg
gaggctgaacctggacgaaccatgatggactcattcgaaaacaaagtgaaccaggttttg
aatagggctcgtgatgatgctggaagtagtgctcaaaagagtttatcggagagcaacaat
cttaaagccatggttacagcagggtccaaagggagttttatcaacatatcccagatgact
gcttgtgtggggcagcagaacgttgagggtaagcgtatcccttacgggttcatagaccgg
acattgccccacttcactaaagatgattatggaccagaaagtcgtggatttgtagaaaat
tcctacctgcgtgggttaactccacaggagttcttttttcatgctatgggtgggagggaa
ggtcttatagatactgcagtcaagacatctgagactgggtacattcaaaggagactggtg
aaggctatggaggatattatggtcaaatatgatggcactgtcagaaattcattgggggat
gttatacagtttctttacggggaagatgggatggatgctgtttggatagaatcacaaaag
ctggattctttaaagatgaaaaaatcagaatttgataagactttttcgtatgagcttgat
gatgaaaattggaatccagactacatgttgcatgaacatgttgaggatctcaaaactatt
agagagtttcgcaatgtgtttgatgcagaggttcagaaacttgaaacagacagattacaa
cttggaacagagatagcagtaacaggtgataattcttggccattgcctgttaacctgaag
aggctcatttggaatgcacaaaaaacctttaagattgacttccgaaggacttccgatatg
cacccaatggaaatcgtggaagctattgataagctccaggagaggctgaaggttgttcct
ggtgatgacttgttgagtgttgaagctcaaaagaatgctacactgtttttcagtatttta
cttcgcagcactttcgctagcaaacgggtgttggatgagtacaggcttactcgtgaagca
ttcgagtgggttattggggagatagagtcacgcttcctgcaatcacttgtagcacctggc
gaaatgattggttgcgttgctgcacaatctattggtgagcccgccactcagatgacactg
aatactttccactatgctggtgtgagtgcaaagaatgttaccctaggtgttcccaggttg
agggaaattattaatgtggctaagagaatcaaaacgccatctctgtctgtctacttaaag
cctgaagctaataaaacaaaggagagggcgaaaaatgtccagtgtgctttggaatacacc
actctccgaagtgtaactcaagctacagaagtgtggtacgatccagaccccatgagcaca
ataattgaagaggatgttgattttgtcaactcttactatgaaatgccagatgaagaggtt
aaccctgataaaatttctccttggttgcttcgcattgagttgaatcgcgaaatgatggtg
gataagaagttgagcatggctgacattgctgagaagatcaatcttgaatttgacgatgat
ttaacttgtatattcaatgatgacaatgcggaaaagttgatccttcgaatccgtatcatg
aatgctgaagctccaaaaggggaattggttgatgaatccgctgaagatgatgtatttttg
aagaagattgagagtaacatgctgacagaaatggctcttcgaggtatcccagatattaac
aaagtgttcattaaacatggtaaagttaacaagtttgatccgaatgaaggatttaaagca
gagcaagagtggatgctggatacagaaggtgttaatctcttagctgtcctgtgtcatgat
gatgttgatgccaggaggacgacgagtaatcacttgattgaaattcttgaaattcttgga
attgaggcagttcgtcggtcactgttggatgagttgcgtgttgttatatctttcgatgga
tcttatgtgaattatcggcatctggctatcctttgtgataccatgacctatcgtgggcac
ttgatggccattactcgtcatggcatcaatcgaaatgacaccggtcccatgatgaggtgc
tcatttgaagaaactgtcgatattcttcttgatgctgcagtgtttgcagaaacagattat
ttgagaggtgtaactgaaaacataatgttaggccagcttgcacctattggtacaggagac
tgtgccctgtatctcaatgacgagatgttgaagaatgcaattgaactccagctacctagt
tatatggatggtcttgatttcggtatgacaccatctcgttctccagtgtcgggaactcca
tatcatgagggcatgatgtctccaaattatttgctgagcccaaaccttcgtctgtcaccc
atttcagatgcccagttttctccctatgttggaggaatggcattctctcctacttcatct
ccgggctacagcccatcatcccctggctacagtccgtcctcccctggatacagtcccacg
tcccctggttatagtcccacctcgcccgggtacagccccacttcacctgggtacagtccc
acctctccaacctatagtcctagttctccaggttatagtccaaccagtccggcctattct
cctacaagtccatcatactcacccacctcacccagctatagccccacttctccaagttac
agccccacatctccaagttacagccctacatctccaagttacagtccaacttcaccaagt
tacagtccaacatcacctgcttacagcccgacatcacctgcttacagcccgacttcacct
gcatatagtcccacatcaccttcctacagccctacatcgccgtcctatagccctacatca
ccttcctacagcccaacgtcgccctcctacagccccacatctccatcctacagcccaacc
tcaccagcctacagcccaacttctcctggttacagcccaacttctcctagttatagtcca
acttctcccagctatagccctacatctccaagttacaatcctcagtcagccaaatacagt
ccatcgtcggcatactctccaagcagcccaagattatcaccatctagtccatatagtcct
acgtctccaaattacagcccaacctcaccatcgtattcacctacatctccatcttactct
ccttcaagccccacatacagtcctggaagcccatttacctctggagtgagcccagattat
agtccaagttctccacaatacagtccaagtgctgggtactcacctagtcaacctgggtac
tcgccgtcatctactagccagtacacgcctcaaacgagcgagaaggatactaaggatgac
agaagcactcgttaa
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integrated database retrieval system
