Phytobacter diazotrophicus: HHA33_14420
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Entry
HHA33_14420 CDS
T06586
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pdz
Phytobacter diazotrophicus
Pathway
pdz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HHA33_14420 (pdeR)
Enzymes [BR:
pdz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
HHA33_14420 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
PAS_10
Motif
Other DBs
NCBI-ProteinID:
QJF17657
LinkDB
All DBs
Position
complement(2991891..2993882)
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AA seq
663 aa
AA seq
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MRDDQEQNLLFRYLGSSSPFWRLTADSNALHFAPDEDSESSQVVTLNDEQATQLRQMTVI
TSSLTMHISLFGDNVPVHLVGRKINKTEWAGTASAWNDTSSVARDLVQGLSFAEQVVSEA
NSVIVILDRHGNIQRFNRLCEEYTGLKEQEVIGQNVFKLFMSHNEAEASKRNISEFFRNG
ASYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAIHELISNAIDNRGDTQIGIVYLDLDNFKKVNDAYGHMFGDQLLQAVALAI
LSCLDEGQTLARLGGDEFIVLATDSSQSALEAMASRIITRLRQPFRIGLIEIYTGCSLGI
SLAPQHGNDRESIIRNADTAMYIAKENGRGKFCVFTPEMNQRVFEYLWLDTNLRKALDND
QLVIHYQPKVTWRGEVRSLEALVRWQSPERGLIPPQDFIAYAEESGLIVPLGRWVMLDVV
RQVAKWRDKGINLRVAVNVSARQLADQSIFSDLKQALHDLNFEYCPIDVELTESCLIENA
DLALSVIQQFSDLGSQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVKDIHKQSVSQSLV
RAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAAVFERWYKRYQAR
KKG
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagagacgatcaggaacagaatctactgtttcgttacctgggttccagcagcccattc
tggcgattgaccgctgacagcaacgcattacatttcgcccctgatgaagactctgagtca
agtcaggttgtgacacttaatgatgagcaggcaacacagctacgacaaatgaccgttatt
acttccagcctgactatgcatatatctttatttggcgataatgttcccgttcatttagtt
ggccgcaaaatcaataaaaccgagtgggccggaaccgcgtcggcgtggaatgacacgtca
tctgtggcacgggatctggttcaagggctctcctttgccgaacaggttgtttccgaagcc
aattccgtaatcgtcatcctcgatcgccatggcaatatccagcgctttaatcgactttgt
gaagaatatacgggtttaaaagagcaagaggttatagggcaaaacgtttttaaactcttt
atgagccataacgaagccgaagcctctaaacgcaatatctctgaatttttccgtaacggc
gcttcttacgaagtcgaacgctggattaaaacgcgaaaggggcaacgtctgttcttattt
cgcaataaattcgtacacagcggcagcggaaaaaacgaaatcttccttatttgttccggc
accgatattaccgaagaacgtcgggcacaagagcgcttacgggttttagcgaataccgac
accattaccgggttgcccaatcgtaatgctattcatgagttaatcagcaacgcgattgat
aatcgtggcgacacgcaaattggtatcgtttacctggacctggataatttcaaaaaagta
aacgatgcctatggccatatgttcggcgaccaacttttacaggccgtggccctggcgatt
ttaagctgtctggacgaaggccagactctggcgcgcctgggaggtgatgagtttattgtc
ctggcgacagattcgtcgcaaagcgcgctggaggcgatggcttcgcgtattataacccgt
ctgcgccagcccttccggattggcctaatcgagatttacaccggttgttcgttggggatt
tcccttgccccacagcatggtaacgatcgcgaaagcattattcgcaacgccgataccgcg
atgtatatcgcaaaagaaaacggacgtgggaaattctgtgttttcactcccgagatgaat
cagcgggttttcgagtatttatggcttgatactaacctgcgtaaagcactcgataatgac
caactggtgattcactatcagcccaaagtcacctggcgtggtgaagtgcgcagcctggaa
gccctggtgcgctggcagtcgccggaacgtgggttaattccgccgcaggattttattgcc
tatgcagaagaatcagggctgattgtgcccctggggcgctgggttatgctcgatgtcgtg
cgtcaggtcgcgaagtggcgcgataagggcatcaatttgcgtgtggcggtaaacgtctca
gcacggcagttagcagaccagtcgatattcagcgatttaaaacaggctttgcatgatctg
aattttgaatattgcccgatagacgttgaactgacagaaagttgtctgattgaaaatgcg
gatcttgcgctgtcggtgattcagcagttcagtgatttgggctctcaggtacatctcgac
gactttggtaccggttactcttccctttcacaactggcgcgttttcctatagatgcgata
aaactcgatcaatctttcgttaaggatatccataaacagtctgtttcgcagtcgctggtg
cgggcgattgttgcggtcgcacaggcgctgaatttacaggtgattgccgaaggggttgaa
aatgcgaaagaagacgccttccttaccaagaacggcgtcaacgaacggcagggattttta
tttgctaaacccatgcccgctgccgtattcgagcgatggtataagcgctatcaggcgcgg
aaaaagggctag
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