Pedobacter aquae: FYC62_12345
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Entry
FYC62_12345 CDS
T06312
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pej
Pedobacter aquae
Pathway
pej03030
DNA replication
pej03410
Base excision repair
pej03420
Nucleotide excision repair
pej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FYC62_12345 (polA)
03410 Base excision repair
FYC62_12345 (polA)
03420 Nucleotide excision repair
FYC62_12345 (polA)
03440 Homologous recombination
FYC62_12345 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pej03032
]
FYC62_12345 (polA)
03400 DNA repair and recombination proteins [BR:
pej03400
]
FYC62_12345 (polA)
Enzymes [BR:
pej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FYC62_12345 (polA)
DNA replication proteins [BR:
pej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FYC62_12345 (polA)
DNA repair and recombination proteins [BR:
pej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FYC62_12345 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FYC62_12345 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
HHH_5
DUF3913
HHH
Motif
Other DBs
NCBI-ProteinID:
QEK52351
UniProt:
A0A5C0VL14
LinkDB
All DBs
Position
complement(2817479..2820280)
Genome browser
AA seq
933 aa
AA seq
DB search
MKKLFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLLEVLKKENPSHIAVVFD
TEAPTERHTDFLAYKANRQAMPEDLSLALPYVKKLIEGFNIPVITSDGYEADDVIGTLAK
KAEKEGFTVFCMTPDKDFAQLVSENIFIYKPARMGNDMEILGVKEVLAKWEIEHIHQVID
ILGLWGDAVDNIPGIPGIGEKTAKALIKQYGSMENIIANSHELKGKQRENVEAFAAQGLL
SKRLATILLDAPVEFHEESFRLDKPDKEQLEPLFAELEFRTLGKRVFGEDFSVNDAKISS
SGQMDLFSSPAAGNLVQKPVTELAEAIIPSKNIDNTPHEYHLVNDAASRQNLIQELLKQK
EICFDTETTGLDAHEAELVGLSFSFKVGDGYYVPLSENQYDCKAILEEFRPVFENENIRK
IGQNIKYDLLILKWYNINLKGELFDTMLAHYLLDPDTRHNMDVLAENYLGYTPVSITELI
GKKGKNQGNMRDVELEKAKDYAAEDADITLQLKEVFEPLLKEVQADNLAQNLENPLIYVL
ADMEKEGVRIDIQQLQTYSKDLEVEINRLEATVFDKAGVKFNIGSPKQLGEVLFDKLKLD
DKAKKTKTGQYQTGEDVLLALANKSDIVRDILDYRQLCKLKSTYVDALPLMINTKTNRVH
TSYNQAVAATGRLSSNNPNLQNIPIKTERGREVRKAFIPRDENHILLSADYSQIELRIIA
EISKDENMMEAFVNGLDIHTATAAKVYGVALSEVTSEQRRNAKAVNFGIIYGQSAFGLSQ
NLGIPRKEAAEIIENYFTQYAGIKRYMADTMNFARENGYVETIMGRRRYLRDINSANQTV
RGFAERNAINAPIQGSAADMIKVAMIQIHQDIISQKLQSKMTMQVHDELVFDVLISEKEQ
MKTIIQNRMKNALKTTVPIVVEIGEGQNWLEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactctttcttttagatgggatggctttaatttatagagcccattttgcatta
agtaaaaacccacgttttacttcaacgggtatcaatacctcggcagtaatgggttttgct
aataccttattagaagtcttaaagaaagaaaatccatcgcatattgcggtagtttttgat
actgaagctccaacagaaaggcataccgattttttagcttataaagccaataggcaagcc
atgccagaggatttatctcttgccttgccttatgtgaaaaaactgatagaaggttttaac
atcccagtaattacttctgatggttacgaagccgatgatgtgattggaaccctagctaaa
aaggcagaaaaagaaggttttaccgttttttgtatgacaccggataaggattttgcccaa
cttgtatcagaaaatatcttcatttacaaacccgccagaatgggtaatgatatggagatt
ttaggggtgaaagaagttttggcaaaatgggagatagaacatatccaccaagtgatagat
attttaggcctttggggcgatgctgtagataatatcccgggtataccaggtattggagaa
aaaaccgctaaagctttaattaagcaatacggctctatggaaaatatcatagccaacagt
catgagcttaaaggcaaacaaagagaaaatgtggaggcttttgcggctcaaggtttgttg
tctaaaaggttagcaacaattttattagatgctccggtagagtttcatgaagaaagcttt
aggttagataaaccagataaagagcaattagaacctctatttgccgagttggaatttaga
actttaggtaaacgtgttttcggagaagatttttctgtaaatgatgcaaaaatcagcagc
agcggacaaatggatttgtttagcagcccagcagctggcaatttagtacaaaaaccagtt
acagagctagcagaagctataataccatcaaaaaatattgataatacgccacatgagtat
catttggttaatgatgcagccagtaggcaaaaccttatccaagaacttttaaaacaaaaa
gaaatttgttttgatacagaaaccactggtttagatgcgcatgaagccgaattggtgggt
ttatcttttagttttaaagttggcgatggctattatgtgccgctttcagagaatcagtat
gattgtaaagctattttagaggagtttagacctgtttttgaaaatgaaaacatcagaaaa
attggtcagaatattaagtacgatttacttattctaaaatggtataacattaacctaaaa
ggcgaattgtttgataccatgctggcccattacctgctagaccctgatacccgccataat
atggatgtattggcagaaaattatttgggttatacgcctgtttctattaccgaactgatt
ggtaaaaaaggaaaaaaccagggcaatatgcgtgatgttgagctagagaaagcaaaagat
tatgctgccgaggatgccgatattacgctacaactaaaagaagtttttgagcccttactt
aaagaagttcaagccgataatttagctcaaaacttggaaaatccattaatctacgtttta
gcagatatggagaaagaaggggtgcgtatagatattcagcaattgcaaacctattctaaa
gatttagaggtagagataaaccgtttagaagccacagtttttgataaagcgggtgttaaa
tttaatattggctcgccaaaacaactaggcgaggttttatttgataagcttaagcttgat
gataaagccaagaaaactaaaaccgggcaataccaaactggtgaagatgttttacttgca
ctcgccaataaatcagacattgttagagatatattagattaccgccagttatgtaagtta
aagtctacttatgtagatgcgcttccgctgatgataaatactaaaaccaatagggtgcat
acttcatataatcaagcggtagctgcaacaggtaggttaagttctaataatccaaacttg
caaaatatccccataaagacagaaagaggcagagaagtaagaaaagcatttatccctaga
gatgaaaatcatatccttttatctgccgattattctcaaatagagctacgcatcattgca
gaaataagtaaagatgaaaacatgatggaagcttttgtaaatggtttagatatccatacc
gcaaccgcagctaaggtttatggtgtagcgttatcagaagtaacatcagaacaaagaaga
aatgctaaggcggtaaactttggaattatatacggccaatctgcttttggtttatcgcaa
aatttaggtatcccaagaaaagaagcggcagaaattatagaaaactacttcacacaatac
gcaggcatcaaaagatatatggcagataccatgaattttgctcgtgaaaatggatatgta
gaaaccattatggggcgtagaagatatttaagagatatcaactcggccaaccaaactgta
agaggttttgcagagcgaaatgccattaatgcacctatacaaggttctgcggcagatatg
attaaggttgccatgattcaaatacatcaagatatcatcagccaaaagctgcaatctaaa
atgaccatgcaggtacatgatgagttggtttttgatgtgctgatttctgagaaagagcaa
atgaaaaccattatccaaaacaggatgaaaaatgcccttaaaacaactgtacctattgtg
gtagaaattggcgaaggacaaaactggttagaggcacattaa
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