KEGG   Porphyromonas endodontalis: LA319_03900
Entry
LA319_03900       CDS       T08002                                 
Symbol
ribD
Name
(GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
pend  Porphyromonas endodontalis
Pathway
pend00740  Riboflavin metabolism
pend01100  Metabolic pathways
pend01110  Biosynthesis of secondary metabolites
pend01240  Biosynthesis of cofactors
pend02024  Quorum sensing
Module
pend_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:pend00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    LA319_03900 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LA319_03900 (ribD)
Enzymes [BR:pend01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     LA319_03900 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     LA319_03900 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD APOBEC_N SNAD4
Other DBs
NCBI-ProteinID: UBH65325
LinkDB
Position
927465..928493
AA seq 342 aa
MTANDTLYMQRCLDLAALATGYTSPNPLVGAILVHQDRIVGEGYHHRAGEPHAEVNCFAS
VRPEDEKWIAQSTLYVSLEPCSHYGKTPPCAELVLQKRVPRVVVAMQDPFPEVAGRGIAL
LRSKGVEVEVGVLEEEARWLNRFFLTAVEKNRPWVTLKWAQSRDGFIDRVREDASQRPEV
FSSPIRQRYVHYLRHCHDAILVGRRTIQLDNPSLTNRFWWGTSPQPVVLDSEGVLCHQAY
KVNQNSTSKPWFIVSPSAFRSQPLPENCIAIERSEHFIASLLETLASRKIQSLLVEGGAQ
TLQAFLDSGLYDAVDREVSPRLLYEGVAAPIFSGDTRCSLLD
NT seq 1029 nt   +upstreamnt  +downstreamnt
atgaccgcaaacgatactctttatatgcaacgctgcctcgatttggcagctctagctacg
ggttacacctctcccaatccgcttgtgggggctattcttgtgcatcaagataggattgta
ggggagggctatcaccacagagccggagagcctcatgctgaggtaaattgctttgcatcg
gtacgccccgaagatgagaagtggattgcccaaagcaccctgtatgttagtcttgagccc
tgctcgcactatgggaaaacacccccttgtgccgaactcgtcttgcagaagagggtacct
cgcgtagtggtggctatgcaagatcccttcccagaggtggcaggtcggggtattgcgctc
cttcgcagcaaaggtgtggaggtagaagtgggtgtgctggaagaggaggctcgatggctc
aatcgctttttcctcacagctgtagaaaaaaatagaccttgggtcacgctcaaatgggcg
cagagccgtgatggctttatcgatagggtacgagaggatgcttcccaacgtcccgaggtt
tttagttcccccatcaggcagcgttatgtccactatttgcgccattgccacgatgctatt
ttggtgggtcggcgtactatacagctagacaatccctccctgaccaatcgtttttggtgg
ggtacctctccccagcccgttgtactagatagtgagggcgtgctgtgccatcaagcctat
aaagtcaatcaaaatagtacctctaaaccctggtttattgtctctccctcagcatttcgc
tctcagcctctgcccgagaattgcatcgccatagagcgcagcgagcattttattgcaagt
ctgctggagacactcgcctctcgcaagatccaatcccttcttgtggaggggggagctcaa
acgctacaagctttcctcgatagtggtctctacgatgcggtggatcgggaggtcagccct
cgtttgctgtatgagggcgttgcggctcccattttctcgggagatacacgatgctctcta
ctagactaa

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