Phalaenopsis equestris: 110028132
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Entry
110028132 CDS
T05601
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
peq
Phalaenopsis equestris
Pathway
peq03020
RNA polymerase
peq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
peq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110028132
09124 Replication and repair
03420 Nucleotide excision repair
110028132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
peq03021
]
110028132
03400 DNA repair and recombination proteins [BR:
peq03400
]
110028132
Enzymes [BR:
peq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110028132
Transcription machinery [BR:
peq03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110028132
DNA repair and recombination proteins [BR:
peq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110028132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
110028132
NCBI-ProteinID:
XP_020585525
LinkDB
All DBs
Position
Unknown
AA seq
1827 aa
AA seq
DB search
MDIRFPYSPAEVAKVRCVQFGILSPDEIRQMSVAQIEHGETMERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECSGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILADEEDAR
FKQALKIRNPKNRLKRIYDACKSKKKCAGGDDIDLQSQQDSEEPVKKSRGGCGAQQPNIT
IDGMKMVAEYKAPKKKSDDQEQLPEPVERKQVLSAERVLSVLKRISDEDCQLLGLNPKYA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQI
NLVRFSAWHAESETGFITPGDTQVRIEKGELLSGTLCKKTMGTSTGSLIHVIWEEVGPDS
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADVATMEKINETISKAKNDVKVLIKEAQDKV
LEAEPGRTMMESFENRVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPYGFIGRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKAEFDKVYRYEIDDNNWSPSYMLPEHVEDLKTIPEFKNVFDAEVQKLVVDRY
QLGTEITTTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVV
PGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEFRLTREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
KPEINKLKELAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDAEFVRSYYEMPDEE
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELQDDTAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEGFK
PDNEWMLDTEGVNLLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD
NLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLDFGMTPARSPISGT
PYHEGMMSPSYLLSPNIRSSPITDAQFSPYVGGMAFSPSSTPGYSPSSPVYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPTYSPTSPTYSPTSPSYSPTSPAYSPTSPVYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPTSPRLSP
SSPYSHSSPKYSPTSPSYSPTSPTYTPPSPTYSPTSPYNSSMSPDYSPSSPQFSPSAGYS
PTAPGYSPSSTSQYTPQTSNKDESSTR
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggacatacgcttcccttactcaccggcggaggttgccaaggtgcgatgcgtacagttc
ggcatcctcagccctgatgaaattcggcaaatgtcagttgcacagatcgagcatggggag
actatggagagaggcaagccgaagcctggcgggctcagtgatccgcggctgggaaccatt
gaccggaagatgaagtgtgaaacttgcatggccaacatggcagagtgctctggccatttc
ggtcaccttgagcttgccaagcctatgttccatatcggctttctgaagactgtgcttgct
atcatgagatgtgtttgcttcaattgctccaagatccttgcggatgaggaagatgcacga
ttcaagcaagctttaaagatcagaaatccaaagaacaggttaaaaagaatttatgatgcc
tgtaaaagcaagaagaaatgtgcaggtggtgatgatattgatcttcaaagtcagcaagat
tctgaagaacccgttaagaaaagccgaggcggatgcggtgctcagcaacctaacattact
attgatggcatgaaaatggtggctgaatataaagctccgaagaagaaatcagatgaccaa
gaacagcttccggaacctgttgaaagaaaacaagttctttctgcagagagggttcttagt
gttctgaagaggataagcgatgaggattgtcagctgctcggcttgaatccaaagtatgct
cgtcctgattggatgatattacaggtcctaccaattcctcctcctcctgtgaggccatct
gtgatgatggacacctcttccagaagtgaggatgatttgactcatcagcttgcaatgata
ataagacataatgagaatttaaggcgacaagaaaggaatggagctcctgctcacatcata
acagagtttgctcagttactgcagtttcatattgcaacatactttgataatgagcttcct
ggtcagccaagggccacccagcgttcaggacgaccgattaaatcaatttgcagcagactg
aaggcgaaagaaggtagaatcagaggtaatttaatgggaaagcgagttgatttttcagca
cggacagtcataacacctgatccaacaattaatattgatgagttgggagttccatggagc
atagctttgaatctaacttacccagaaactgtaactccatataacattgagaggctgaag
gagttagttgagtatgggcctcatcctcctcctggtaagacaggcgcgaagtatattatc
agggaagatggccagagacttgaccttcgatatttgaagaaaagcagcgaccaccacctt
gagcttggatacaaggtggagcggcatttgcaagatggggactttgtgctttttaaccgg
cagcctagtctccacaaaatgtccatcatgggtcaccggatcaaaatcatgccttattca
acttttcgcctgaatttatcagtgacctctccatacaatgctgattttgatggagatgag
atgaacatgcatgttccccagtcatttgaaactagagcagaggttctggagcttatgatg
gtgcctaaatgtattgtttctcctcagtcgaatcggcctgttatgggcattgtccaggat
actttgttaggatgtcggaagatcaccaaaagagacacatttatagaaaaggatgtgttc
atgaatattttgatgtggtgggaggacttcgatggaaaaattcccgctcctgcaatttta
aagccaaggcctctctggacgggaaaacaagtgtttaatctgatcatacccaagcagatt
aacttggtgaggttttcagcgtggcatgccgaatcagaaacaggatttattacaccagga
gatacacaagttcgcatcgaaaaaggagagcttttgtcgggaactctctgcaagaagacc
atggggacatctactgggagtctgattcatgttatctgggaggaggttggcccggattca
gcgcgaaagtttttgggacacactcagtggctcgttaattattggcttttacagaatgga
tttagtattggaattggtgatacaattgctgatgttgctacaatggagaagattaatgaa
acaatatcgaaggctaaaaatgatgttaaagtgcttatcaaggaggctcaggataaagtt
ttagaagctgagccaggacgaaccatgatggagtctttcgaaaatagagtgaatcaggtg
ttgaacaaggcacgtgatgatgctggaaacagcgcccaaaaaagtctttcagagagtaat
aatctgaaagcaatggttacagctggatcaaagggcagctttattaatatttcacagatg
actgcctgtgtggggcagcagaatgtggagggcaaacgaataccatatggtttcatcggt
cgaacattacctcacttcacaaaaaatgattatggtcctgaaagtcgtggttttgtggag
aactcttacctccgtggtttaactccgcaggagttcttttttcatgctatgggtggtaga
gaaggtctgattgacacggcagtgaagacttctgagactggttatatccagcgccgccta
gtgaaagctatggaggatataatggtcaaatatgatggtactgttagaaattcattgggt
gatgttatccagttcctgtatggagaagatggcatggatgctgtttggattgaatcacag
aagttggattcgctaaagatgaaaaaagcagagtttgataaagtctataggtacgagatt
gatgataacaactggagcccgagctatatgttgcctgaacatgtcgaggatctgaaaacc
attccggagttcaaaaatgttttcgatgcagaggtccaaaaactggtggttgataggtat
cagctgggcacggagattactactactggagataactcatggccaatgccagtgaatttg
aaaagactcatttggaatgcacaaaagacattcaaagttgatttgcgacggccttctgat
atgcatccgatggagattgtggaggctgttgataagcttcaggaaagacttaaagttgtt
cctggagatgattttctgagcatggaagcccagaaaaatgccactttgtttttcaatatc
ttgctacggagcactttcgcaagcaaacgggtattgaaagagtttcggcttacgcgtgaa
gcctttgaatgggtcattggtgaaatagaatcacgttttctacagtcgctcgtcgcgcct
ggcgaaatgattgggtgtgtggccgctcaatccattggagaaccagctacccagatgacg
ctgaatacgttccactatgctggtgttagtgccaagaatgtcacccttggtgtgccgagg
ttgagggagatcataaatgttgctaagaaaatcaagacaccttcactctccgtttattta
aaaccggagataaacaagctcaaagaattagcaaagaatgtacagtgtgccttggagtat
actaccttgcgaagtgtaactcacgcaacagaagtatggtatgatcctgatccaatgagc
acaatcattgaagaggatgctgagtttgtgaggtcatattatgaaatgcctgatgaagag
gttgcccccgaaaagatttctccttggctgcttcgtattgagctcaaccgagagatgatg
gtcgacaagaaattgagcatggcggacattgcggagaagatcaaccacgaatttgatgat
gatttaacatgcattttcaatgatgataatgctgagaaactcattcttcggatacgtatc
atgaatgatgaagcccctaaaggagaattgcaggacgacactgctgaagatgatgtcttt
ctcaagaagattgagagcaacatgttgactgagatggctcttcgaggcattccagacata
aacaaagttttcattaaatctggaaagataaacaaatttgatgagaatgaaggattcaaa
cctgataatgagtggatgcttgacacagaaggtgttaatctcttggccgttatgtgccat
gaagatgttgatgcatctaggactacaagcaatcacttgatagaagttattgaagttctc
gggattgaagctgtccgtcgtgcccttctggatgagctacgcgtcgttatatctttcgat
ggatcctatgttaactaccggcatttggccattctctgtgacacgatgacttaccgaggt
cacttgatggctattactcggcatggcataaatcgtaatgataccggaccgatgatgagg
tgctcatttgaggaaactgttgatattctactcgatgctgcagtttttgcagaatctgac
aatctacgtggtgtaactgagaacattatgctcggccagctcgcaccgattggcactgga
ggttgtgcattatatctaaacgaccagatgcttcagcaagctattgaactccagcttcct
agttacatggagggtcttgactttggaatgacccctgcccgttcgccgatctccgggacc
ccttatcacgaaggaatgatgtcgccgagctatcttctcagtccaaatatacgttcatcg
cctatcaccgatgctcagttttcaccttacgttggcgggatggccttctctcctagttcg
acaccaggctatagtccatcctctccagtctatagtccatcatcaccaggatacagtccc
acttctcctggatacagccccacttctcctggatacagcccaacctctcctggatacagt
cccacttctccaacatacagccctagctctccaggatacagtccaaccagtcctgcttat
tctcccaccagtccatcttactctcctacttcgcctagctatagcccgacatcaccgagc
tatagtcctacctcacccacgtacagcccgacttctccgacctacagtcccacatcacca
agctacagccccacttctcctgcttacagtcctacttcaccggtttacagcccaacttcg
ccgtcttatagtccaacctcaccttcttacagcccaacttcaccctcgtacagtccaact
tcgccctcatacagccccacgtcacctgcctacagcccgacatctccgggttacagcccg
acttctccaagttatagtcccacatcccccagttacagcccaacttctccaagctataat
ccttcagcaaaatacagtccttctctagcatattctcctacctccccaagattgtcccct
tccagtccatacagccattcatctccaaaatacagcccgacttcaccgtcatattctcct
acgtcgcctacgtacacaccaccgagtcctacgtacagtccaaccagcccatataattct
agcatgagccctgattacagtccaagctctccacaattcagtccaagtgctggctattcc
cccactgctccaggctattctccctcctcaacaagccaatatactcctcagacgagcaac
aaagatgagagcagcactcgttga
DBGET
integrated database retrieval system
