Paraburkholderia edwinii: KZJ38_34215
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Entry
KZJ38_34215 CDS
T07588
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pew
Paraburkholderia edwinii
Pathway
pew02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pew00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KZJ38_34215 (pdeR)
Enzymes [BR:
pew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
KZJ38_34215 (pdeR)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_8
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QYD72012
LinkDB
All DBs
Position
2:2880816..2882828
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AA seq
670 aa
AA seq
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MNDDQYDQVHQALYARFGTHSPCWRLSSDSNALELSPVTGNGPATAAVALSAQQAAQIRR
LTGVTSHLTLDVRLYGEPLRLHLVGKKLNSSTWAGTASEYDDTESVARDLVHGLSFAEQV
VSEVNSVVVIVDRNGRIQRFNRLAEELTGMKEEDVIGRSVWALFMSSEAGAASSQNISGF
FNRGVSYEVERLVRTVHGERLFLFRNKFVQSGSGMDEQFLICSGTDITEERRAQERLSEL
ANTDSLTGLPNRNAIQDKIRTAIASAAADKSVGILFLDLDNFKKVNDHYGHVFGDRLIQD
VSATVRDCLDEGDTLARLGGDEFIVLSYPATAASLEATAQRILERLRTPFSLGLVEVYTG
CSIGIALFPEHGDSLESLVRAADTAMYVAKDGGKRTYRVFSPEMNRKVAEYMWLDTNLRR
GLDEGQLTLHYQPKLSLATGVVCGVEALVRWNSPERGQIMPTEFIRYAEESGLIGPLGRW
VMQTAAAQAAQWKARGHSLRVAINVSARQLVDTAVVRHFSEALQCANLDPCLVDLELTES
CLIEDEAAAIDLITQFRELGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINVDR
KAQALVRSMVAVAQALQLQVVAEGIETEAEELFMKGLGVEYVQGYLYSQPMPAAEFEQWL
VDRQKVRLIA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaccaatacgatcaggtgcaccaggcgctatacgcaaggttcggtacgcat
agtccatgctggcgtttgtcgagcgacagcaacgcgctcgagctgtcgcccgtgaccggc
aacggtcccgccaccgccgccgtcgcgctcagcgcgcaacaggccgcgcaaattcgccgg
ctgaccggcgtcacgtcgcacctcacgctcgatgtgcgcctttatggcgagccgttgcgt
ctgcatcttgttgggaaaaagctcaatagcagcacgtgggccgggaccgcatcggaatac
gacgatacggaatcggttgcgcgcgatctcgtgcatgggctctcgtttgccgagcaggtc
gtctccgaagtgaattcggtggtcgtgattgtcgaccgcaatggacgtatccagcgcttt
aaccgccttgccgaagaactcaccggcatgaaggaagaagatgtgatcgggcgcagcgtt
tgggcgcttttcatgtcgtcggaagctggcgcggcgtcgagccagaatatttcgggcttc
ttcaatcgtggcgtgtcctatgaagtcgagcggctcgtgcgcaccgtgcacggcgagcgg
cttttcctgtttcgcaacaagttcgtgcaaagcggcagcggtatggacgagcagttcctg
atctgctcgggcaccgacatcacggaagagcgccgcgcccaggagcgtctgtcggaactc
gcgaacaccgattcgctgacaggcctgccgaaccgcaacgcgatccaggacaagatccgc
acggcgatcgcgagcgcggcggccgataagtcggtcggcatcctgtttctcgatctcgac
aacttcaagaaggtcaacgatcactacgggcatgtgttcggcgaccggctgattcaggac
gtgtcggccaccgtgcgcgattgtctcgatgaaggcgatacgcttgcacgtctaggtggc
gacgaattcatcgtgctgtcgtatccggccacggccgcgtcgctcgaagcgaccgcgcag
cgcattctcgaacggttgcgcacgccgttcagcctcgggctcgtcgaggtctataccggc
tgctcgatcggcatcgcgctctttcccgaacacggcgacagcctcgaatcgctggtccgc
gcagccgacaccgccatgtacgtcgcgaaggatggcggcaagcgcacctatcgcgtgttc
tcgccggaaatgaaccgcaaggtcgctgagtatatgtggctcgacacgaacttgcggcgc
ggcctcgatgaaggacagctgacgctgcactaccagccgaagctatcgctcgcaacgggc
gtcgtgtgcggcgtcgaggcgctcgtgcgctggaattcgccggagcgcggacagatcatg
ccgaccgaattcattcgttacgcggaggaatccggattgatcggcccgctcggccgctgg
gtcatgcagaccgcggccgcgcaggcggcacaatggaaagcgcgcggccactcgttgcgc
gtggcgatcaacgtgtcggcacggcaactggtcgacaccgcggtggtccggcatttcagc
gaggcgctgcaatgcgcgaacctcgatccgtgcctcgtcgatctcgagctcaccgagagc
tgcctgatcgaagacgaagccgcggcaatcgacctgatcacgcaattccgcgaactcggc
gcgcaggtgcacctcgacgacttcggcaccggctattcgtcgctgtcgcaactcggccgc
attccgctcgacgtgatcaagctcgatcgcagcttcgtgcgttcgatcaacgtcgacagg
aaagcgcaggcactcgtgcgctcgatggtggcggttgctcaggcgctgcagctgcaggtg
gtcgcggaaggtatcgagaccgaagccgaagaactctttatgaaaggcctcggcgtggaa
tacgtacagggctacctgtacagtcagccgatgccggctgctgaattcgaacaatggctg
gtcgaccggcagaaggtccggctgatcgcctga
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