Pseudomonas frederiksbergensis: PFAS1_17640
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Entry
PFAS1_17640 CDS
T04786
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pfk
Pseudomonas frederiksbergensis
Brite
KEGG Orthology (KO) [BR:
pfk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfk03009
]
PFAS1_17640 (rimO)
Enzymes [BR:
pfk01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
PFAS1_17640 (rimO)
Ribosome biogenesis [BR:
pfk03009
]
Prokaryotic type
ribosomal protein modification factors
PFAS1_17640 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
APV41087
LinkDB
All DBs
Position
complement(3802305..3803642)
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AA seq
445 aa
AA seq
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MSTTPAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYEDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRKVHPSVLAVTGPQQYEQVVNAVHDAVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWREICPD
LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVK
QDRWDRFMAHQQAISSARLQMRVGREIEVLVDEVDEQGAVGRCFFDAPEIDGNVFIDNGS
NLKPGDKVWCKVTDADEYDLWAEQI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactcctgcgccggccaatccaaaagttggcttcgtatccctgggttgcccc
aaagcactggtcgactccgagcgcatccttacccagctgcgcatggaaggctatgacgtc
gtgtccacttacgaggacgccgatgtcgtggtggtcaacacctgtggcttcatcgactcg
gccaaggctgagtctttggaagtgatcggcgaagccatcaaggaaaacggcaaggtcatc
gtgaccggctgcatgggcgtcgaagaaggcaacattcgcaaggtgcacccaagcgtattg
gccgtgaccggtccgcagcagtacgagcaggtggtcaacgccgtgcacgacgccgtgccg
ccgcgccaggatcacaacccgctgatcgacctggtgccgccgcaaggcatcaagctgacc
ccgcgccactacgcctacctgaagatttccgaaggctgcaaccacagctgcagcttctgc
atcatcccgtcgatgcgcggcaaactggtcagccgtccggtcggtgatgtactggacgag
gctcagcgcctggtcaaggccggcgtcaaagagctgttggtgatctcgcaagacaccagc
gcctacggtgtcgacgtgaaataccgcaccggtttctggaacggcgcgccggtgaaaacc
cgcatgaccgaactctgcgaagccctgagcaccctcggcgtctgggttcgtctgcactac
gtttacccgtacccgcacgtcgacgagctgatcccgctgatggccgccgggaaaatcctg
ccgtacctggacatcccgttccagcacgccagcccgaaagtcctgaaagccatgaaacgc
ccggcgttcgaagacaagactctggcgcgcatcaagaactggcgcgaaatctgcccggac
ctgatcatccgttcgaccttcatcgtcggcttccctggagaaaccgaagaagacttccag
tacctgttgaactggctgaccgaagcgcaactcgatcgcgtcggctgcttccagtactcg
ccggtcgaaggcgcaccggccaacctgctggacgcggccatcgtgccggacgacgtcaag
caagaccgctgggaccgcttcatggcgcaccagcaagccatcagctcggcacgcctgcaa
atgcgcgtcggccgtgaaatcgaagtgctggtcgatgaagtcgacgagcaaggcgcggtc
ggccgctgcttcttcgatgccccggaaatcgacggcaacgtgttcatcgacaacggcagc
aacctgaaaccaggcgataaagtctggtgcaaagtgaccgacgccgacgaatacgacctg
tgggctgaacagatctaa
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