Perca flavescens (yellow perch): 114552466
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Entry
114552466 CDS
T07494
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pflv
Perca flavescens (yellow perch)
Pathway
pflv03440
Homologous recombination
pflv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114552466 (brip1)
03460 Fanconi anemia pathway
114552466 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pflv03400
]
114552466 (brip1)
Enzymes [BR:
pflv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114552466 (brip1)
DNA repair and recombination proteins [BR:
pflv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
114552466 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
114552466 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
114552466
NCBI-ProteinID:
XP_028429070
LinkDB
All DBs
Position
3:32144407..32240422
Genome browser
AA seq
1382 aa
AA seq
DB search
MATSSVEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNYGNHCLLESPTGSGKSLALLCSA
LGWQRAQFAKLQDGGSFVENKSQSDKKCGDYKKSDVATPCWCVCHSNASSTTATTAATPA
VVDLTVSPCKDTAQPIPPAPEHMPLTEESQPKEQSIASRLSQKFQSLLGSGREKDDDFQP
DKKRLRTPAEHKSCKRPRLDRGVIFIDDDDDDDDDELGLKHEPSGPQSWRSTEPNSQAAG
LSSSCCSPEPCSRCPCASTKDGVKDKDKDGKKKIPKIFFGTRTHKQITQITHELKRTVYS
GVPMTILSSRNHTCVNSAVAPHSNRNERCKDLLDAKDGKSCHYYHGVQRMRDQCTLQRVH
GLHDAWDIEDIVALGKRLRSCSYYAARELMQDALIIFCPYNYLLDPMIRESMEIDLAGQI
VVLDEAHNIEDCARESASYTLDHNSLLMSRDELDGMVNSNIRRSKHETLRNFCYSLINWI
QESQSLMSERGYESACKVWNGKDILGIFHNLGITADTFSILKQNLAAVLEKEERVGLVNG
KEDMVQIPTISSATSTVLKNLFMVLGFIYSTEDNCRFAEDYRVALQKSYAWTNQVPPDAA
DAQGFIVRPRYRQRQSVRVKTEVLTLSFWCLNPAVAFSSLSKSVHSIVLTSGTLSPMGSF
SSELGVKFSIQLEANHVINKSQVWVGTVGSGPQGRKLCATFQHTETYAFQDEVGALILHV
CQVVAKGVLCFLPSYKMLDKLRDRWTNTGLWEKLEQRKVVITEPRGGGKGDFDELLQMYY
DAIKCCEERDGALLIAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQ
HCKSRGLLPGNRWYEIQAYRALNQALGRCIRHKNDWGALILVDDRYRNNPNKYITGLSKW
VRQLVQHHDTFSNAMQSLVAFSQVQQKVEGAPADSQTLSSAVSSPNSHLSVTLEGQGLPN
ATEPQTPRSYVKLPEPQQDTSPSTIKFFSCTQLKADQNEKAERLNMMHSPSAEPLSHQKR
TAQPLYHIFTSSPISTSFKKPIFKGKGPSSFSQHLKTPNHSEPNEKQQISSPQKKTAATC
LKQGAEDSSSEIQVEPHDLALDPSPVTSPPRCDNPDEDEEEDQTIFFTPELFEGEGNEGS
PQKDVKTKSPPRMGLGAESPALLSEELFGSEQARGHEQASAFDGQIAISVSKESTELSQG
QEEEIIEQKQGEGGEQVDNQSRQTGSRLRRLSRSRQKAPSTPSGGCYEAKSVGRACLQKI
ETRSSQRRTHRARADYESKAMKPGLKSRPSKARPVRVHSSKKDIVQENAYQSHFLPQVQD
DSWITCQQTELILKPSVNDRVTESGESSVGVREHKALKKVPTTPGRSTRLEFDIVSPKKK
KT
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggctacatcctcagtggagtacaccattggaggggtgaagatcaacttcccttgcaag
gcatacccatcccagctggctatgatgaattccatcgtacgagggctgaactatgggaac
cactgtttgctggagagtcccacaggaagtggaaagagcttggctttgctgtgctcggct
ctgggatggcaacgtgctcagtttgctaaactacaagatggaggaagctttgtggagaac
aagagccagtcagataaaaagtgtggagactataagaagtcagatgtcgccaccccttgt
tggtgtgtgtgccacagcaatgccagcagtaccacggctacaacagcagccacacctgct
gttgtggacctcaccgtgtcaccctgcaaagacacagcacagccgatacctccagcaccc
gaacatatgccgttaacagaggagtcgcagcccaaggaacaatctatagcctctcgtctg
tctcagaagttccagtctctcctcggctctggccgcgagaaggacgacgatttccagcca
gataagaaacgccttcgcactcctgctgaacacaagagctgtaaaaggccacgtctggac
cggggagtgatattcatagatgatgatgatgatgatgatgatgatgagctggggctgaaa
catgagccctcaggtcctcagagttggaggtccacagagccaaacagccaagcagctggt
ttgtcctcctcatgctgttcccctgaaccctgctcccggtgcccgtgtgcttcaaccaaa
gacggtgtgaaggacaaagacaaagatggcaaaaagaagattcctaagatcttctttggc
actcgcacacataaacagataactcagattacccacgagctcaagcgcacagtttactcc
ggtgtgcccatgaccatcttatcgagtagaaatcacacctgtgtcaactcagcggtggca
cctcattccaaccgcaatgaacgctgcaaggatctgctggatgccaaagatggcaagtca
tgccactactaccatggtgtccagaggatgcgggaccagtgcactctacagcgggtccac
ggactccatgatgcctgggacattgaggacattgtcgcactgggcaaacggctccggtca
tgctcctactatgctgctcgtgaacttatgcaggatgccctaatcatcttctgcccgtac
aactacttgctggacccaatgatcagagagagtatggagatcgacctggcaggtcagatc
gttgtgctggacgaggcccacaacattgaggactgtgcgagggagagtgccagctacact
ttagaccacaacagtctgctgatgtccagggacgagctcgacggcatggtcaacagcaat
atcagacgatccaaacacgagacactaaggaacttctgctatagtctgatcaactggatc
caggagagccaaagcctgatgtctgaacggggatatgagagcgcctgtaaagtctggaat
gggaaggatatactgggcatctttcataacctgggcatcactgctgacaccttcagcatc
cttaagcaaaacttggcagcagtattggagaaagaggagcgtgtcggtttggtcaatggt
aaagaggatatggttcagatcccaaccatcagctcagctacctccactgtcctcaaaaac
ctcttcatggtgcttggctttatctactccactgaggacaactgcaggtttgctgaggac
taccgggtagctctgcagaaaagctatgcttggacaaaccaggtcccacctgatgccgct
gatgcccagggctttatcgttcggccacgctacagacaacgccagagcgttcgagtcaag
acagaagtcctgacactcagcttctggtgccttaaccccgctgtggctttctctagtttg
agtaagtcggtgcacagcattgtgctgacatcaggaaccctgtcacccatgggctcgttc
tcttctgaacttggggtgaaattctccatccagctggaggccaaccatgttatcaacaag
tcccaggtttgggtgggcactgttggttcaggaccccaaggcagaaaactctgtgccacc
ttccaacatactgaaacgtatgccttccaggacgaggtgggtgcgctgattctccatgtc
tgccaggtcgtggccaagggtgtgctctgctttttgccttcctacaagatgctggacaag
ctgcgagaccgatggaccaacactggtctctgggagaagctagaacaacggaaagttgtg
atcacagagccccgcggtggtggcaagggggattttgacgaactgcttcagatgtactac
gatgccatcaagtgctgtgaggaaagagatggtgcactgctgattgctgtctgtaggggt
aaagtgagtgaaggactagactttactgatgacaatgccagggcagtggtcaccatcgga
attcccttcccaaacatcaaagacctccaagtggaactgaagatgaagtacaatgaccaa
cactgcaaatccagaggtcttctcccaggcaatcgttggtatgagattcaggcctacaga
gcgctaaaccaggccctgggaaggtgtatacgccacaagaatgactggggtgccctaatt
ctagtggacgaccgttacaggaataatcccaataagtacatcacaggtctgtctaaatgg
gtccgccagcttgtccagcatcatgacaccttcagcaatgccatgcagtctctggtagcg
ttctctcaggtgcaacagaaggtggagggggctcctgcagatagtcagaccctcagctct
gccgtctcatctccaaacagtcacttgtcagtaactttggagggacagggtctgcccaat
gccacagaacctcagacaccccgctcatatgtcaaactgcctgaaccccagcaggacaca
agcccctcaaccatcaagtttttttcttgtacacagttgaaagctgaccaaaatgaaaaa
gcagaaagattgaatatgatgcacagcccctcagcagagcccctatcgcatcaaaaaaga
accgctcagccgctgtaccacattttcacctccagccccatcagcaccagcttcaagaag
ccaatatttaaaggaaaagggcccagtagtttcagccagcacttgaaaacacctaatcat
tcggagcccaatgagaaacagcagatctcctctccacaaaagaagactgcggcaacttgt
cttaagcaaggggctgaagacagttccagtgaaatccaagtggaaccacacgatctggct
cttgatccttctccagttacatctcctccccgctgtgacaatccagatgaagatgaagag
gaggaccaaactatcttctttactccagaacttttcgagggggaaggcaacgaaggcagt
ccacagaaagatgtgaagaccaagtcacctcccaggatgggtttaggggcagagagccct
gccctgctgtcagaagaactttttggctctgagcaggcccgagggcatgagcaggcctct
gcttttgatggacagattgctatttcagtcagtaaggagagcacagagttgtcacaggga
caggaagaagaaattatagaacagaagcaaggtgaggggggagagcaggtggataaccag
agcaggcagacaggcagtaggcttcgcaggttgtccaggtccaggcagaaagctccctcc
actccatcaggtggatgctatgaagccaagagtgtagggagagcctgtcttcagaagatt
gagactaggagcagccagaggaggactcacagggccagagcagattatgagtcaaaagca
atgaagccgggtttgaagagcagaccatccaaagccagacctgtcagagtacacagctca
aaaaaagacattgttcaagagaatgcttatcagtcacatttcttgccacaggttcaggat
gacagctggattacctgccagcagacagagctaatcttgaaaccaagtgtaaatgacaga
gtgactgagtcaggagagtcctctgtgggtgtgagggaacacaaagctcttaaaaaagtg
cctaccacacctggtcgttccacaaggcttgagtttgacattgtgtctcccaaaaaaaag
aagacatag
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integrated database retrieval system
