Pseudomonas fluorescens Pf0-1: Pfl01_0056
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Entry
Pfl01_0056 CDS
T00283
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pfo
Pseudomonas fluorescens Pf0-1
Pathway
pfo03030
DNA replication
pfo03410
Base excision repair
pfo03420
Nucleotide excision repair
pfo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pfl01_0056
03410 Base excision repair
Pfl01_0056
03420 Nucleotide excision repair
Pfl01_0056
03440 Homologous recombination
Pfl01_0056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pfo03032
]
Pfl01_0056
03400 DNA repair and recombination proteins [BR:
pfo03400
]
Pfl01_0056
Enzymes [BR:
pfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pfl01_0056
DNA replication proteins [BR:
pfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pfl01_0056
DNA repair and recombination proteins [BR:
pfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Pfl01_0056
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pfl01_0056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABA71800
UniProt:
Q3KKA6
LinkDB
All DBs
Position
complement(61047..63854)
Genome browser
AA seq
935 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVDGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLNDLDRDAKRQELSA
AAEPVPAGDLFSAPAEEEAPAAPAEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGID
AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPNKLKVGQHAK
FDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQ
DIAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLV
PVLARIERQGAFVDAELLGIQSIELGNKMIALEREAFEIAGEEFNLGSPKQLGVILYEKL
GLPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTG
RIHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRI
MAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKL
GKDIGVDTKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKP
QERAAAERTAINAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLV
DQVREEIRVHMSEAAKLDVPLLVEVGVGNNWDEAH
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcgtcttacctgtaccgcgcctttcac
gcgctgccaccgctgaccacctccaaaggcctgccgaccggtgcggtcaaaggcgtgctg
aacatgctcaagagcctgcgcaagcagtatccggacagcccgttcgcggtagtgttcgac
gccaagggtgggacatttcgcgatgagatgtacgccgaatacaaggccaaccgcccaagc
atgccggacgacatgcgcgtgcagatcgagccgctgcaccagagcgtgatcgccctcggt
ttcccgctgctgtgcgtcgaaggcgtcgaggccgatgacgtgatcggcaccctggcccgc
agcagcgcggccgccgaccgcccggtgatcatctccaccggcgacaaggacatggcgcaa
ctggtcgacggccacattaccttggtcaacaccatgtccggtagttcgatggatgtggac
ggcgtgaaggagaaattcggcgtcgctccagagcagatcatcgattatctggccctgatg
ggcgattcctccgacaacatcccgggcgttcccggcatcggcccgaaaaccgcgtccggc
ctgctggtgggcgtcaacggcggtctgaccgagctgtatgcgcagctcgacatcgtgccg
accctgccgattcgtggcgccaagaccctgccggccaagctcgaagaacacaaggaaatg
gccttcctctcctatcaactggcgaccatcaaggtcgacgtgccgctggatatcggcctc
gacgacctgcaaatgggtccggaagatccggccaagctttacgagttgtacaccctgctg
gaattcaagagttggctgaatgacctggatcgcgatgccaagcgccaggaactgagcgcg
gccgccgagcctgtgccggccggtgatctgttcagcgcgcctgccgaagaggaagcgccc
gccgctccggctgaagccgcgtacgaaaccatcctcgatcaggcgcgattcgacgtttgg
ctggaaaagctgaagaacgccaaactgttcgccttcgacaccgaaaccaccggcatcgac
gcgcaacaggcgcagctggtcggcttgtccttcgcggtgcaggccaacgaagcggcctac
atcccgctgacccactcctacatcggcgtgccggagcagctggatcgcgacactgtgctg
cgcgcactcaagccgatccttgaagacccgaacaagctcaaggtcggccagcacgccaag
ttcgacatgaacatcctggccaactgcgccatcggtggcgatcagaacgaaggcatcacc
gtgcgcggaattgccttcgacacgatgcttgagtcctatgtgctcaactccaccgccacc
cgccacgacatggacagcctagcgcagaagtacctggatcacaccaccgtgagttttcag
gacatcgccggcaaaggcgccaagcaactgaccttcgaccagatcgccctggaacaggcc
gggccgtatgccgccgaagatgccgacgtgaccctgcgcctgcaccagacgctgttcgac
aagctcagcgctatcccgagcctggcgagtgtactgaccgatatcgagatcccgctggtg
ccagtgcttgctcgcatcgagcgccagggcgcgttcgtcgacgctgaactgctcggcatc
cagagcattgaactgggtaacaaaatgatcgcgctggagcgtgaagccttcgagattgcc
ggtgaagaattcaacctcggttcgccgaagcagctgggcgtgatcctctacgaaaaactt
ggcctgccggtgctgaagaagaccgccaagggccagccgtccaccgccgaagaagtgttg
gcgaaactggccgaagacgatcaccgcttgccgaaagtgctgatggaacaccgttccatg
agcaagctgaaaagcacctacaccgatcgcctgccggagcagatcaacccgcgtaccggg
cgtatccacacttcgtaccatcaggccgttgcgtcgaccggtcgcttgtcgtcgagcgat
ccgaacctgcagaacatcccggtgcgcaccgccgaaggccgacgcatccgtcaggcgttc
gttgcgccgaaaggttacaaactgctggcagcggactactcgcagatcgaactgcggatc
atggcccacctgtcccgcgacgaaggcctgatgaatgctttccgcaataacctggacgtg
cacaccgccacggcggccgaagtgttcaaggtcgagctgaatgaagtgacgtctgaccag
cgccggggcgccaaggcgatcaacttcggtctgatctacggcatgggcgcgcagaaactg
ggcaaggacatcggcgtcgataccaagaccgccaaggcctacatcgacacctacttcgcg
cgttatccgggcgttcgcgaatacatggatcgcacccgcgcccaggcagcagaccagggc
tttgtggaaacgatcttcggtcgtcgcctgtatctgccggacatcaactccaacaagccg
caggaacgcgcggccgccgaacgcacggcaatcaacgcgccgatgcagggcaccgcagcg
gacatcatcaagaaagccatggtggcagtggataactggctgtgcgcttccgggctggac
gccaaagtcatcctgcaggtgcacgacgaactggtgctggaggtccgcgaggatctggtc
gatcaggttcgcgaagaaattcgcgtgcacatgagcgaagccgcgaaactggatgtgccg
ttgctggtggaagtgggagtcggcaacaactgggacgaggcgcactga
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