Pseudomonas fragi: AV641_05495
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Entry
AV641_05495 CDS
T04285
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pfz
Pseudomonas fragi
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pfz03009
]
AV641_05495 (rimO)
Enzymes [BR:
pfz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
AV641_05495 (rimO)
Ribosome biogenesis [BR:
pfz03009
]
Prokaryotic type
ribosomal protein modification factors
AV641_05495 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
CLP1_P
TRAM
Motif
Other DBs
NCBI-ProteinID:
AMB78561
LinkDB
All DBs
Position
complement(1183594..1184916)
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AA seq
440 aa
AA seq
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MSNVPRVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAES
LEVIGEAIKENGKVIVTGCMGVEESAIRNVHPSVLAVTGPQQYEQVVNAVHDAVPPNLNH
NPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLV
KAGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPYP
HVDELIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKNWRVICPDLIIRS
TFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDIKQDRWD
RFMAHQQAISAARLQMKIGKEIEVLIDEVDEQGAVGRCFFDAPEIDGNVFIATEKDIKPG
DKIMCRVTDADEYDLWAEVI
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgttccacgtgtagggtttgtatcactaggttgccccaaagccctggtcgac
tccgaacgcatcctcacgcagctgcgtatggaaggctacgatgtcgtctctacctaccag
gacgccgatgtcgtggtggtcaacacctgcggtttcatcgacagcgccaaggctgaatca
ctggaagtgattggtgaagccatcaaggaaaacggcaaggttatcgtgaccggctgcatg
ggcgtggaagaaagcgccatccgcaatgttcacccgagcgtgctggccgtcaccggcccg
cagcagtacgagcaagtggtcaacgccgtgcacgacgccgtgccgcccaacctgaaccac
aacccgctgatcgacctggtgccgcctcaaggtgtcaaactgacgccgcgtcactacgcg
tacctgaagatatccgaaggctgcaaccacagctgcagcttctgcatcatcccgtcgatg
cgcggcaaactggtcagccgcccggtaggcgacgtcctcgacgaagcccagcgcctggtc
aaggccggcgtcaaagagctgctggtgatttcccaggacaccagcgcctatggcgtagac
gtgaaataccgtaccggtttctggaacggcgcgccggtcaagacccgcatgaccgaactc
tgcgaagcactgagctcgctgggtgtctgggtacgcctgcactacgtttacccgtacccg
cacgttgacgagctgattccgctgatggccgccggcaagatcctgccgtacctggacatc
ccgttccagcacgccagcccgaaagtgctcaaggccatgaagcgcccggcatttgaagac
aagaccctggcccgcatcaagaactggcgcgtcatctgcccggacctgatcatccgctcg
accttcattgtcggcttcccgggcgagaccgaagaggacttccagtacctgctcgactgg
ctgacagaagcgcaactggatcgcgtaggttgcttccagtactcccccgtggaaggtgct
ccggccaatttgctggacgcggccatcgtgccggatgacatcaagcaggaccgctgggac
cgcttcatggcccaccagcaggccatcagcgcggcccgcctgcagatgaaaatcggcaag
gaaatcgaagtcctgattgacgaagtagacgagcaaggcgctgttggccgttgcttcttc
gacgctccggaaatcgacggcaacgtatttatcgccaccgaaaaagacatcaagcccggc
gacaagatcatgtgccgtgtgaccgatgctgacgagtatgacttgtgggctgaagtcatc
taa
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