Pseudochaenichthys georgianus (South Georgia icefish): 117446410
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Entry
117446410 CDS
T09629
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo00310
Lysine degradation
pgeo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
117446410 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgeo03000
]
117446410 (prdm2b)
03036 Chromosome and associated proteins [BR:
pgeo03036
]
117446410 (prdm2b)
Enzymes [BR:
pgeo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
117446410 (prdm2b)
Transcription factors [BR:
pgeo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117446410 (prdm2b)
Chromosome and associated proteins [BR:
pgeo03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
117446410 (prdm2b)
BRITE hierarchy
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
zf-C2H2_6
SET
zf-C2HC_2
zf-C2H2_jaz
zf-C2HE
zf-H2C2_2
zf-C2H2_11
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
117446410
NCBI-ProteinID:
XP_033938460
EnsemblRapid:
ENSPGEG00000004886
LinkDB
All DBs
Position
5:16563420..16577065
Genome browser
AA seq
1691 aa
AA seq
DB search
MACTGGAVESRDTIPAHVWKGLPDCLHLGPSTINPSRVGVWATRAIPKGKKFGPFVGEKK
KRSQVTSNVYMWEVYFPARGWMCVDATDPMKGNWLRYVNWARSTEEQNLFPLEINRAIYY
KVLRPIGPGEELLVWYTVEDNPEITAALEEERASSLIRNNSPKAKRARKKLLDTARQAGL
GGDKKTKVTKPSVREMWDGGKSLKEEDERPSTLAPPHKPQATHPKASIDHKEVEDMSAVM
TDRGHGEEEEEDADGYEGSGEVQQQTAQHSHVAVSMQNKPPGSLLTGVEESHNYSQGKLD
SREPDPDLDLDPDLEGDLEGESYPCQHCERHFSTRQGLERHIHIHAISNQQSQMFKCRYC
SKSFGSQVGRRRHERRHESGLKKKPGSLAGTASLLSPVMQTDGSSPDCTSPTSHYIAIGS
QFTGVPLHNADMQRKEIGPYADRPFILDENGESKELHPCKYCNKAFGTHTNMRRHQRRIH
ERHLLPKGVRRKGMLLQEASVQKQQQPDESPSTSPPTVYVPSADTEDEVDRDDYAVDISK
NISENLSFYIDGKIVSTSSVSSCEVIEVDSRSAALFGLDTVILSPDQISQALKVEGRTSA
AKHVSNIGQPAAKRRTSTPPFVPSLKVESESATFTASSSSSSSSTSSSSNLLVSSLFQQA
ADSSAFQREKTVYLSPKLKQLLQTQDIQKSTLALITESHRLASPLSVTPLPGASGRFKRR
TSSPPSSPQPSPACKTESCKPDMVSSFVLKVPKVESRCASPPGILLDKEDGDSLSLTEND
MHGQTSSNSGGNSCNQQPLDLSNSVSRRRDSSTKVLGDSALDLSFHRKSNAELESKGSPA
PQPPTKKRKPNTSMLEKVLMNEYLGLPLPGEEGPSAIPNLNCFPTRSPNVALETPHPSPP
SLTPVTMNPSSPGNSSMTSPTPPPPLLPTIPSPPAMPSSPLSQPLDSPAARPLPVLSPKM
SPRSAEDVSESEENLFAEENKEEEDNHISKPLDSPNTPLKDPLNSSSASSPPESTSVDLS
TTEDVSLTCNSLLNNRINQNQDSEAEKSLPASPESTSPSSSPPPASQDPSPSLVSQALPQ
IKIKEPQHCTDELPVMNHAPQDEVNSSPHSPNKPSDKTSEAEKVDSAYCKTFVCNVCEEP
FNSIKELSGHITEHAADWPFKCEFCVQLFEDAPALLAHRSALHGVGRICVCSVCSKEFAF
LSNLEQHQKDLHPSETCSHTTVESGKLRPQNYTDPSRAKEESSPSTPAPETINESAPHSD
ADVAKEEPDINGNHAEEVAEDPNEELYTTIKIMASEGGKPKGPDVRLGINQHYPSYKPPP
FPYHSRSHAGSVASATNFTTHNIPQTFSTAIRCTKCGNSFDNMPELHKHILACATASDKK
RYTPKKNPIPLKQIVKSPNGVVSPSAAIAGQSPFRRMGQPKRLNFNQDNGKTKMSALSKK
KNQLVQKAISQKNKAATTAKKAIVKVEEEQASNVCPHCSREFTYPASLNKHMAVSCPMKP
VVKRGKKGLAEVKKEPVSAVDKNMNLRKKASDCEIPQAEPEPKPLGKTRARSSVAADPEP
SQTSKAKPAAALGKLKRPASFPVPVSASKKTKKSQAQSLPPTPSDPDTPSEAAPQRPAMR
MQRMGKEAAPKRLSEAKSPPQPKKEERFSLRTRVGGPVTRRQMVNTAPSAEVKAEESPIQ
EPKETQEVLMK
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atggcttgtactggaggggcggtggaaagtcgggatacaattccagctcatgtgtggaag
ggtttacctgactgcttgcatctgggaccttccactataaatccaagccgtgtcggtgtc
tgggccactcgggcgatccctaaaggcaagaagtttggcccatttgtcggagagaagaaa
aaaaggtcccaggtgaccagtaatgtatacatgtgggaggtttatttcccagcacgagga
tggatgtgtgttgacgccacagaccccatgaaggggaactggctgcgatacgtcaactgg
gctcgctccactgaagagcagaatcttttccctctggagatcaacagagccatttactac
aaagttttgaggcctatcgggccaggagaggagctgctggtgtggtacactgtagaagac
aaccccgagataacagctgcactggaggaagaaagagccagcagtctgatcaggaacaac
tcacccaaggcgaagcgagccagaaaaaagctgctggatacagccaggcaggctggtttg
ggtggagacaagaaaacaaaagtaaccaaaccatctgtcagggagatgtgggatggggga
aaaagtctgaaggaggaggatgagaggccatcaactttagcacccccacataaaccccag
gcaacccatccgaaggcaagcattgaccataaggaggtggaggacatgtcagcagtgatg
acggacaggggacatggggaggaagaggaggaggatgctgatggttacgagggatcgggt
gaagtgcagcagcaaactgctcagcattcacatgtggctgtttccatgcaaaataagcct
cctggctctttacttaccggtgttgaagaaagccataattactcgcagggaaagttagat
tctagagaaccggatcctgatcttgacctcgaccccgaccttgagggtgacctagagggt
gagtcatatccctgtcagcactgtgagcgtcacttctccaccagacagggtctggagcgt
cacatacacatccacgctatctctaatcagcaatcgcaaatgttcaagtgccggtactgc
agcaaatccttcggctcacaggtggggcggcggcggcatgagaggaggcatgagagtggg
cttaagaaaaagccgggctctctggcagggacagccagtttactcagtcctgtgatgcag
actgatggttcaagtccggactgcaccagtccaacaagtcactatatagccatagggtcc
cagtttactggagtacctctgcacaacgctgacatgcagagaaaggaaatagggccttat
gctgaccgtccctttatattggatgaaaatggggagtcaaaggagctccatccctgcaag
tattgcaataaagcatttggcacacataccaacatgcgccgacatcaacgcagaatacat
gaaaggcacctgctacctaaaggagttcgcaggaaaggcatgctgcttcaagaggcttca
gtgcagaaacagcagcagcctgacgagtcccccagcaccagccccccgactgtctacgtg
cccagtgcggacacagaagatgaggtagacagggatgattatgcagttgacatatccaaa
aacatatcagagaatttgagcttctacattgacggcaagattgtgtccaccagttcagtg
agcagctgcgaggtgatagaggtggactccagatctgcagctctgtttggtctggacacg
gtcatcctcagccctgatcagatcagtcaggcgctgaaggtggaggggagaacaagtgcc
gcaaagcatgtctccaacatcggccagccagcagcaaaaagaagaacatctacgccccca
tttgttcccagccttaaagtggagtccgaatcagcgacgttcacagcctcttcatcctcc
tcatcctcctccacatcgtcctcatctaatctactagtgagcagtctgtttcaacaagct
gccgattcatcagcatttcaacgagagaaaactgtgtatctatcacctaagctcaaacag
ctccttcagacacaagacattcagaaatccaccctcgccctgataacagaaagccataga
ctggcctccccgctgtcggtaacgccgctgccaggggcttcaggcaggtttaaaagaaga
acatcctctcccccttcgtctccacaacctagtcctgcatgtaaaacagagagctgtaaa
cccgacatggtgagctcattcgtcctcaaggtgccaaaggtggagagccgatgcgcctcc
cctcctgggattctactggacaaggaagatggagacagcctgagcctcactgagaacgat
atgcacggccaaacctcatctaatagcggtggaaattcttgtaatcagcagcccttggat
ctgtcgaactccgtcagtaggaggagggacagctcgacgaaggtgctgggggattcagct
ctggatttaagctttcatcggaagagcaacgctgagcttgaatccaagggaagtccagct
ccacagcccccgacaaaaaagagaaagccaaacaccagtatgcttgaaaaagtgctgatg
aatgagtatttaggtctgcctttgccaggagaggagggaccctcagccatacccaattta
aactgtttccccactcgctctccaaacgttgctttagaaacgccccacccctccccaccc
tctttgacccctgtcaccatgaacccctcttcccctggcaactccagtatgacatctcct
actccgcctccacctctactgcctaccataccttctccaccggctatgcctagctcgcct
ctttctcaacctttagactcccctgctgcgagacctcttcctgtcctctcaccgaaaatg
tctccgagatcagctgaagacgtgtcagaatcggaggagaatttgtttgctgaagaaaac
aaagaagaggaagataaccatatatctaagccactggactccccaaacactccacttaaa
gatcctctcaatagttcgtcggcatcaagccctcctgagtcgacatcagtagatctgtcc
actacggaggatgtttctttgacttgcaacagtctgttaaataacagaattaaccaaaac
caagactcggaagcagagaaatctcttcctgcttctccagaatccacatctccctcatca
tctcctccccctgcctcacaagatccatcaccatcactggtttcacaggccttgcctcag
attaagataaaagagcctcagcactgcacagatgagctgccagttatgaatcacgcacct
caggatgaagtcaactcttcacctcactctcccaataaaccgtctgataaaacctcggag
gcagaaaaggttgactcggcatactgcaagacttttgtgtgtaacgtctgcgaggagccg
ttcaactccatcaaggagctcagtggacatatcacggagcacgctgctgattggcccttc
aagtgtgaattctgtgtgcagctgtttgaagacgccccggccctgctggctcaccgctcg
gcactacacggagtgggcaggatctgtgtgtgctctgtttgttccaaggagtttgcattt
ctctctaacctcgagcagcaccaaaaagatctgcatccaagcgagacgtgttcacacacc
actgtggagagcggcaagcttaggccacagaactacacggatccatccagagccaaagag
gagagcagtccctcaacaccagcaccagagacaataaatgaatctgctccacacagtgat
gctgatgtagcaaaagaagagcccgatattaatggcaatcatgcagaagaggtggcggag
gaccccaatgaggagctgtacactacaataaagatcatggcctcagaaggaggcaagcct
aaaggccctgatgttcgcctcggcattaaccaacactaccccagttataaacccccaccc
tttccttatcatagccgttcccatgctggctctgtagcctcggccacgaacttcaccacc
cacaacataccacaaactttcagcactgccatacgctgcaccaagtgtggcaacagcttc
gacaacatgcccgaactgcacaagcatattttggcttgtgccactgctagtgataaaaaa
cgctacactcccaagaaaaaccccatccccctcaagcaaatagtaaagagtcccaacgga
gtggtgtcgccctcagcagccatcgcaggtcagagtcctttccgtaggatgggtcagcca
aagagactgaactttaatcaagataatggtaaaacaaaaatgagtgcgctcagtaagaag
aaaaaccagctggtccagaaggcaatttcacagaaaaacaaagctgccactactgcaaag
aaggctattgttaaggttgaagaagagcaggcctctaatgtttgcccccactgcagtcgg
gagtttacttatcctgcaagtctcaataaacatatggcagtcagctgtcccatgaagcct
gttgttaaaagaggcaagaaaggtctagctgaggtgaaaaaggagccagtgtctgcggtt
gataaaaacatgaatcttagaaagaaagcttcagactgtgaaataccgcaggcagagccg
gagcccaaacctctgggaaagaccagagcccgtagctcggtggcagcggaccccgaaccc
tctcagacaagcaaggcaaaacctgcggctgcgctgggcaaactaaagaggcctgcctcc
ttcccagtgccagtttctgccagcaagaaaacaaaaaagagtcaagctcagtctctccct
cccaccccctcagacccagacactcccagcgaagcagcgccacaacggccagccatgagg
atgcagcgcatgggcaaagaggcagcacccaagagattatcagaggccaaatctccacca
cagccgaagaaagaggagcggttctcccttcgaacgagagtagggggtccggtcaccagg
agacagatggtcaacacagctccttctgctgaggtgaaagcagaagagtcaccaattcaa
gagccaaaagagactcaggaggtgctgatgaagtga
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integrated database retrieval system
