Pseudochaenichthys georgianus (South Georgia icefish): 117455986
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Entry
117455986 CDS
T09629
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04020
Calcium signaling pathway
pgeo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117455986 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117455986 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117455986 (grin1a)
Ion channels [BR:
pgeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
117455986 (grin1a)
BRITE hierarchy
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
117455986
NCBI-ProteinID:
XP_033951557
EnsemblRapid:
ENSPGEG00000024724
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All DBs
Position
12:complement(5060011..5095753)
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AA seq
951 aa
AA seq
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MRLFLLAVLFWCSCARAGCEPKIVNIGAVLSQKRYEQVFKDAVTQANQVYGRDKFKLTAI
SVTHKPNAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDLMREFNWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFSQDTNLTALLLEAKELEARVIILSA
SEEDAAAVYKAARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHIND
AVAVVAQSIQELFEKENITEPPKGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKTRLVQVGIYNGTQVVMNNQRKIIWPGGETEKPQGFQMSTRLKIVT
IHQEPFVYVKPTQPDGTCHEEMTLNGVLIKKVICTGPNETIPGNLSGRPIVPQCCYGFCV
DLLIKLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTIN
NERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLL
DRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFA
MIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELS
TMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGI
GMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLV
AGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPSSSLETQDDRKSGRAE
PDPQKKASFRSISTNLASSIKRRRSSKDTQYPPTDITGQLNLSDPSVSTVV
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtttctgttggcggtgctcttctggtgctcctgcgcgcgggccggctgtgag
ccgaagatcgtgaacatcggggccgtgctgagccagaagagatacgagcaggtcttcaaa
gatgccgtgacccaggccaaccaggtttatggaagagataaattcaagctgactgccatc
tccgtcacgcacaagcccaacgccatccagatggctctgtccgtgtgcgaggacctcatc
tccagtcaggtctacgctatcctggtgagtcaccctccccagtccaatgaccacctcact
ccaacgcctgtctcctacactgcgggcttctaccgcatccccgtggtggggctcaccacc
cgcatgtccatctactccgacaagagtatccacctgtcctttctgcggacagtccctcct
tactcccaccaggcgcacgtgtggttcgacttgatgcgagagttcaactggaaccacatc
atcctgatagtgagcgatgaccacgaggggcgcgctgctcaaaagaggctggagaccctg
ctggaggagagagaaacaaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcagccaggacactaac
ttaactgccctgctgctggaggccaaagagctggaggcccgcgtcatcatcctgtccgcc
agtgaggaggacgctgctgcagtgtacaaggctgcccgcttcctcaacatgacgggctcg
gggtacgtgtggctggtgggcgagcgggagatgtcgggtaaagccctgagcgaggcgcca
gacggtctgatcggcctccagctcatcaacgggaagaatgagtcggcgcatatcaatgat
gcggtggctgtggtggctcagtccatccaggagctctttgagaaggagaacatcactgaa
cccccgaaaggatgtgtgggcaacaccaacatctggaaaacagggccgctctttaaacgg
gtgctgatgtcgtctaaataccccgagggcctcacaggtcgcgtggagttcaatgacgac
ggggacaggaagtacgcccattacagcatcctcaactaccagaagactcgactcgttcaa
gtcggcatttacaacggaacacaggtggtaatgaacaatcagcggaagatcatctggcct
ggaggagagacggagaaaccacagggcttccagatgtccactcgactaaagatagtgacg
attcaccaggagccatttgtgtatgtgaaaccaactcaaccggatggaacatgccacgag
gaaatgacattaaatggagtcttaataaaaaaggttatctgcactgggcccaatgagacc
atcccaggtaacctatcaggacgcccaattgttccccaatgttgttacggattctgtgtt
gatctgctcatcaagttggctatgaccatgaacttcacctatgaggtgcacctggtggct
gatgggaaatttggaacacaggagcgggtgaacaacagtaacaagaaagagtggaatggc
atgatgggagagctcctggggggcctggctgacatgattgtagccccgctgactattaac
aacgaacgagcccagtacatcgaattctccaagccctttaaatatcaaggtctcaccatc
cttgttaaaaaggaaatacctcgcagtacactggactcgttcatgcagccgttccaaagc
acgctgtggctgctggtgggtctttcggtgcatgtggtggcggtgatgctttacctacta
gaccggttcagcccgtttggaagatttaaagtaaacagtgaagaagaagaagaagatgcc
ctcaccttatcatctgctatgtggttctcctggggagtgttgctgaactccggtattgga
gaaggtgcaccgcgcagcttctcagcgagaatcctaggtatggtgtgggccggatttgcc
atgataattgtggcatcctatactgccaacctggctgccttcctggtgttggaccgacct
gaggagcgcatcaccggcatcaatgacccaaggctgagaaacccatcggacaagttcatc
tacgccacggtgaagcagagctccgtggacatctacttccggcggcaggtggagcttagc
accatgtaccgccacatggagaagcacaactatgagagtgccgccgaggctatccaggct
gtgcgtgacaacaagctgcatgctttcatctgggactctgcggtgctggagtttgaagct
tcgcagaagtgcgacctggtgaccacgggagagctgtttttccgttcgggctttggcata
ggcatgcgcaaggacagcccctggaaacagaatgtgtccctggccattctcagttctcat
gagaatggcttcatggaagacctagataaaacctgggtgagataccaggagtgtgactca
aggagcaatgccccagccacactcacctttgaaaacatggcaggggtattcatgctggtg
gccggtgggattgcagcaggtatcttcctaatcttcattgaaatcgcctataagcgccat
aaagacgcccgcaggaagcagatgcagctggcctttgcggcggtcaatgtttggaggaag
aacctgcagccctcttcctctctagagactcaggatgataggaaaagtggtagagcagag
cccgacccccaaaagaaagcctcttttaggtccatcagtaccaacctggcttccagcatc
aagagacgtaggtcctccaaagacacgcagtacccacctactgacatcacgggccagctc
aacttgtctgacccgtctgtcagcaccgtggtttaa
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