Pseudochaenichthys georgianus (South Georgia icefish): 117456315
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Entry
117456315 CDS
T09629
Symbol
notch1a
Name
(RefSeq) LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
117456315 (notch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
Ank
Notch
NOD
EGF_2
NODP
Ank_4
Ank_5
Ank_3
EGF_3
DL-JAG_EGF-like
cEGF
Motif
Other DBs
NCBI-GeneID:
117456315
NCBI-ProteinID:
XP_033952041
EnsemblRapid:
ENSPGEG00000014000
LinkDB
All DBs
Position
12:complement(28036925..28075509)
Genome browser
AA seq
2453 aa
AA seq
DB search
MYRFFVKLTFLIPAIVLTQGLKCSLPTESCLNGGRCEGSHNGNGECKCPSDYVGNRCQYP
EPLQPLPLQEGGECRAVLHGNGFDFRCVCRLGFTDELCLTPNNHACMSSPCRNGGTCDLI
TLTVFRCRCSPGWSGKTCLLSNPCASNPCANGGQCSAFDSTYICTCPPAFHGQTCKQDVN
ECAQSPSPCFNGGVCVNEVGSYSCRCPLEYRGQHCETTYMPCSPSPCQNGGTCRAEGDTT
YDCSCLPGFNGPHCEHNIDDCPGHNCQNGGMCVDGVNTYNCQCPPHYTGQYCTENVDECE
LMPNACQNGGTCHDTHGSYHCVCVNGWTGDDCSENIDDCASAACYHGATCHDRVASFFCE
CPHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNLDIDECSLGA
NPCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECMSNPCHNDATCLDQIGGFHCICMP
GYEGVFCHVNTDECGSQPCLNNGKCVDKINSFHCECAKGFSGSLCQVDIDECASTPCKNG
AKCTDGPNKYTCECAEGYTGQHCETDINECYSDPCHYGTCKDGLASFTCYCRPGYTGRLC
ETNINECLSQPCRNGGTCQDRENTYICACPQGTAGFHCEVNLDDCKSKPCDYGRCIDKIN
GYECACEPGYTGSMCNINIDECAINPCHNGGTCVDGTNRFTCLCPEGYNDPTCLSQVDEC
GSNPCIHGHCQDLVNGYRCTCDSGWSGPNCDINNNECESNPCMNGGTCKDMTSGYHCTCR
AGFTGPNCQTNINECASNPCLNQGSCIDDVAGYKCNCLLPYTGDNCETLLAPCSPRPCKN
GGVCKESEDYQSFSCICPEGWQGQTCEIDINECVKSPCRNGALCHNTMGGYQCKCQPGYT
GQRCETDTDDCKPNPCSNGGLCRDSINSFTCTCLPGFRGGRCEQDINECESNPCRNGANC
TDCVNSYTCTCRPGFSGINCEINTNDCTDSSCFNGGTCVDGINAFTCLCLPGFTSSYCQY
DINECDSKPCLNGGSCLDSYGTYKCTCPHGYTGINCQNLVRWCDSSPCKNGGTCWQQGAS
YTCQCQTGWTGLYCDIPSVSCEVAAKQQGVEVAHLCRNSGQCLDAGNTHYCRCQAGYTGS
YCQEQVDECSPNPCQNGAACTDYLGGYSCECLPGYHGVNCSKEINECQSQPCQNGGTCID
LINTYKCSCPRGTQGVHCEMNLDDCTPSSDPLTNEPKCFNNGKCVDRIGGYQCVCPAGYV
GERCEGDVNECLSDPCDPQGSYNCVQLTNSYRCECRTGYTGQRCDKVFDGCKGRPCKNGG
SCAVASNTPHGFICKCPPGFTGSSCEYDSRSCGGLNCRNGGTCVSGHLGPRCLCPPTFTG
PECQTPTDSLCISNPCYNGGTCQTTPDAPFFKCSCPINFNGLLCHILDYSFVGGFGRDII
PPPEVEVSCEIPQCDEWAGNHICNSLCNNHACGWDGGDCSLNFDDPWQNCSAALQCWRYF
NDGKCDAQCNSPGCLYDGFDCQGQEGTCNPLYDQYCKDHYADGHCDQGCNNAECEWDGLD
CAENMPEKLADGHLVLVVHIPPEQLKNRSSTFLREISSVLHTNVVFRRDARGEPMIFPYY
GNEQDLVKHNVLKRSTDGWPEWAARPASVLGQVQESVSAMVSPRRRRELDPVQIKGSIVY
LEIDNRQCYQQSSECFQSATDVAAFLGALATSGNLNVPYIEAVTSVRPAPSGSELYPMYV
VFLGLAALGFVCLGVLVSRKRRREHGQLWFPEGFKASEPTKKKRREPLGEDSVGLRPMKN
SDINLMDDNQNEWDDEDPECRRFRLEEQAMLDLSDRTDHRKWTQQHLDAADLRTASIAPT
PPQGEVEHDCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDPSAEIISDFIYQGANL
HNQTDRTGETALHLAARYARSDAAKRLLESSADANVQDNMGRTPLHAAVAADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMVEELINCHADANATDDSGKSALHWAAAVNN
VEAAMVLLKNGANKDMQDNKEETPTFLAAREGSFETAKVLLEHFANREITDHLDQLPRDI
AQERMHHDIVRLLDEYNVVRSPGLHSGPLSTSSLSPPLCSPNDYLSNLKPNLSVKKVRKL
SAGKGGKDGGKDNRMKKKKSLDGKGNLLDSTGVLSPVDSLESPHGYLSDVASPPMTSPFQ
QSPPMSLNHLQGNGDHMGQMMGKDMSCMSFDPPRLSHMPVSSPNSQGRGGGQCDWISRMH
PGVGQQGGYSQPISHNMMGALHGVSTATLSQIMGYQNMQTSHLVMQQQQQHSRQLQHQNS
SSTTGGLNQSFPSVDLNDGRSMPILTVMPQETQILGTQFLTPPSQHSYSGPMDHTPNHQL
QVPDHPFLTPSPGSPDQWSSSSPHSNMSDWSEGISSPPTSIHSQMNLIPEQFK
NT seq
7362 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtttctttgtgaaactaacatttctgattcctgcaatcgtcctcacacaaggt
ctaaaatgctcccttcccactgaatcatgcctgaatggaggacggtgtgaaggcagccat
aatggaaatggagagtgcaagtgtcccagtgactacgtgggtaaccgctgccagtacccc
gagcccctgcagcccctccccctgcaggaaggaggggaatgtcgcgcagtgttacatgga
aacgggtttgatttccgctgtgtgtgccgtctgggtttcaccgatgaactgtgcctgacc
cccaacaaccacgcctgcatgagctccccctgccgcaacggggggacatgtgacctcatc
accctcaccgtgttccgctgcaggtgctcccctggatggtcaggtaaaacctgcctgctc
tctaacccctgtgcgtccaacccatgtgcaaacgggggccagtgctcggccttcgactcc
acctacatctgcacctgcccccccgccttccacggtcaaacctgcaagcaagacgtgaac
gagtgcgcccagagcccctccccctgtttcaatggcggcgtgtgtgtcaacgaggtgggc
tcgtacagttgccgctgtcctctcgagtacaggggccaacactgtgagaccacctacatg
ccctgcagcccctccccctgccagaatggaggcacctgccgtgcagagggagacaccacc
tacgattgtagctgccttccaggcttcaatggtccgcactgtgagcataacatcgacgac
tgtccgggccacaactgccagaatggcggcatgtgtgtggacggtgtgaacacctacaac
tgccagtgccctcctcattacacaggtcaatactgcacagaaaacgtggatgagtgtgag
ttgatgcccaacgcttgccagaatggagggacgtgccacgatactcacggcagctaccac
tgcgtctgcgtcaacggctggacgggcgacgactgcagcgaaaacatcgacgactgcgcc
agcgccgcctgttaccatggcgccacctgccacgatcgtgtggcctccttcttctgcgag
tgtcctcatggtcgcacaggtttgctgtgccacctcgatgacgcctgcatcagcaacccg
tgtcagaaaggctccaactgtgacaccaaccccgtcaacggcaaggccatctgcacctgc
ccccccgggtacaccggctccgcctgcaacctggacatcgacgagtgctccctcggcgcc
aacccctgcgagcatggcgggcgctgcctcaacaccaaaggctcgttccagtgcaagtgt
ctccagggatacgagggccctcgctgtgagatggacgtcaatgagtgcatgtctaacccc
tgccacaacgatgccacctgcctggaccagatcggaggcttccactgcatctgcatgcca
ggatacgagggtgtgttctgccacgtcaacacagatgagtgtgggagccaaccttgtctc
aacaacggcaagtgtgtggacaagatcaactccttccactgcgagtgcgccaaaggtttt
tcagggagtctttgtcaggtggacatcgacgagtgtgccagcaccccctgcaagaacgga
gctaaatgtactgacggtcccaacaagtacacctgcgaatgtgctgaaggttacacaggg
cagcactgtgagacggacatcaacgagtgttactcggacccctgccactacggcacctgt
aaggacggcctggcctccttcacctgctactgccgcccgggctacaccggccgcctgtgt
gagaccaacatcaacgagtgtctgagccagccctgcaggaacggaggcacctgccaggac
cgggagaacacgtatatctgtgcctgtccccaaggaaccgcaggtttccactgtgaggtg
aacctggacgactgtaagagcaaaccctgcgactacggccgctgcatcgacaaaatcaac
ggctacgagtgtgcatgcgagccgggctacacaggatcgatgtgcaacatcaacatcgac
gagtgtgccattaacccgtgtcacaacgggggcacgtgtgtggacggcaccaaccgcttc
acctgcctgtgtccggagggctacaacgaccccacctgcctgtcccaggtggacgagtgt
ggcagcaacccctgcatccatgggcactgccaggacctcgtcaacggctacagatgtacc
tgtgactctggctggagcgggcccaactgtgacatcaacaacaacgagtgtgagtccaac
ccgtgcatgaacggggggacctgcaaggacatgaccagcgggtaccactgcacctgcagg
gcgggcttcactggacccaactgccagacgaacatcaacgagtgtgcctccaacccctgc
ctgaaccagggctcctgcatcgacgacgtggccggatacaagtgcaactgtctgctgccc
tacaccggtgacaactgtgagaccctgctggcgccctgcagccccagaccctgtaaaaac
gggggtgtttgtaaagagtctgaagattaccaaagcttctcctgcatctgccccgaagga
tggcaaggtcaaacatgtgagatagatatcaacgaatgtgtgaagagcccgtgccgcaac
ggtgctctgtgccacaacaccatggggggctaccagtgcaagtgccagccaggttacacc
ggccagaggtgtgagaccgacactgacgactgcaagccaaacccctgcagtaacggaggt
ctgtgccgcgacagtatcaactctttcacctgcacctgtctgcccgggtttcgtggcggc
cgatgtgagcaggacatcaacgagtgtgagagtaacccctgtaggaacggggcgaactgc
accgactgcgtgaacagctacacctgcacctgccggccgggcttcagcggcatcaactgt
gagatcaacaccaacgactgcaccgacagctcctgcttcaacgggggcacctgtgtggac
ggcatcaatgcgttcacctgcctgtgtctgcccgggttcaccagcagctactgccagtat
gacatcaacgagtgtgactccaagccgtgcctcaacggggggtcctgcctggacagctac
ggcacatacaagtgcacctgtcctcacggctacacagggatcaactgtcagaatctggtg
cgctggtgtgattcgtccccctgtaaaaacggaggaacatgctggcagcagggggcctcg
tacacctgccagtgtcagactgggtggaccggtctctactgtgacattcccagtgtgtcc
tgtgaggtcgcagccaaacagcaaggggtggaggttgctcacctgtgcaggaactcaggc
cagtgtctggatgctggaaacactcactactgccgctgccaggccgggtacaccgggagc
tactgccaggagcaggtggacgagtgctcccccaacccctgccagaacggagcggcgtgc
accgactacctgggaggctacagctgcgagtgtcttcctgggtatcatggtgtgaactgc
tccaaagagatcaatgagtgtcagtcgcagccctgtcagaacggaggcacgtgcatcgac
ctgatcaacacgtacaagtgctcgtgcccccgaggaacacaaggcgtgcactgtgagatg
aatctggacgactgcaccccctccagcgaccccctgaccaacgagccaaagtgcttcaac
aacgggaagtgtgtggaccgcatcggaggctatcagtgtgtgtgtccagcgggatacgta
ggagagcgctgcgaaggcgacgtcaacgagtgtctgtcggacccctgcgacccccagggc
tcctacaactgcgtccagctcaccaacagctaccgctgcgagtgccgcacgggatacaca
ggtcagcgctgtgacaaagtgtttgacggctgtaaaggaagaccctgcaaaaatggaggg
tcttgtgctgttgccagtaacacacctcacggcttcatctgcaaatgtcctcctggcttc
accggctcttcctgtgagtacgactctcgctcctgcgggggtctgaattgcagaaatggc
gggacctgtgtgtcgggccacctgggcccccgctgcctctgcccccccaccttcaccggg
cccgagtgccagacccccaccgacagcctctgcatctccaacccctgctacaacggcggc
acgtgccagaccacccctgacgcgcccttcttcaagtgcagctgcccgatcaacttcaac
ggcctgctgtgccacatcctggactactccttcgtggggggcttcggccgggacatcatc
cccccgccggaggtggaggtgagctgcgagattcctcagtgtgacgagtgggccgggaac
cacatctgcaactcgctgtgcaacaaccacgcctgcggctgggacgggggggactgctcg
ctgaacttcgacgacccgtggcagaactgttcggccgcgctgcagtgctggcgctacttc
aacgatgggaagtgtgacgctcagtgcaacagcccggggtgtctgtacgacggcttcgac
tgccaggggcaggaggggacctgcaacccgctgtacgaccagtactgtaaggaccactat
gctgacggccactgcgaccagggctgcaacaacgctgagtgtgagtgggacgggctggac
tgtgcagagaacatgccggagaagctggcagacgggcacctggtcctggtggtccacatc
ccccccgagcagctgaagaaccgctcctcaacgttcctcagagagatcagcagcgtgctc
cacaccaacgtggtgttccgccgtgacgccagaggagaacccatgatcttcccgtactac
gggaacgagcaggacctggtgaaacacaacgtgctgaagcgctccacggacggctggccg
gagtgggccgccaggcccgcctccgtcctgggtcaggtccaggagagcgtgtccgccatg
gtcagcccccgcagacgcagagagctggaccctgtgcagatcaaagggtcgattgtgtac
ctggagatcgataaccgccagtgttaccagcagtccagtgaatgcttccagagcgccaca
gatgtagcggcgttcctcggagcgctggccaccagcgggaacctgaacgtcccctacatc
gaggcggtcaccagtgtgagaccggccccctccggctcagagctctaccccatgtacgtg
gtcttcctgggcctggccgctctggggttcgtgtgcctcggtgttctggtgtctcgtaag
aggcgacgcgagcacggccagctctggttccctgaaggcttcaaggcttcagagcccacc
aaaaagaagcgcagagagcctctgggagaggactctgttgggctgaggccgatgaaaaac
tctgacatcaatcttatggatgacaatcaaaacgaatgggacgacgaggatccggagtgc
cggcgcttcaggttggaggagcaggccatgctggacctgagcgaccgtacagatcacagg
aagtggacacagcagcatctcgatgcagctgacctgcgcactgcctccatagcgccgact
cctcctcagggagaggtcgaacacgactgcatggatgtgaacgtcagaggaccagacggc
ttcacccccctgatgatcgcctcctgcagcggcggggggctggagacgggcaacagcgaa
gaggaagaggatccctcggcggaaatcatctccgactttatttaccaaggcgccaacctc
cacaaccagacggatcgcaccggggagacggccctccacctggccgctcgctacgcccgc
tccgatgctgccaagcgcctgctggagtccagcgccgacgctaacgtccaggacaacatg
ggacgcaccccgctgcacgccgccgtggctgcggacgctcagggagtcttccagatttta
atccgaaaccgcgccactgatcttgacgcccgcatgcacgacggaacaacaccgctgatc
ctcgccgcgcgattggctgtggaggggatggtggaggagcttatcaactgccacgccgac
gctaacgccaccgacgactctggaaagtctgctctgcactgggccgcggcggtgaacaac
gtggaggccgccatggtgctgctgaagaacggagccaacaaagacatgcaggacaacaag
gaggagacgcctaccttccttgccgcccgtgaaggaagcttcgagacagctaaagttctc
ctggaacatttcgccaaccgcgagatcacggaccacctggaccagctgccccgagacatc
gcccaggagcgcatgcaccacgacatcgtgcgcctgctggacgagtacaacgtggtccgg
agccccgggctccacagcgggcccctgagcacctccagcctctccccccccctctgctcc
cccaatgactatctcagcaacctcaaacccaacctctctgtaaagaaggtccggaaactg
agtgccgggaaaggagggaaagatggaggtaaagataacaggatgaagaagaagaagtcg
ctggatggaaaggggaatctgctcgattcgaccggcgtcctctccccagtcgattctctc
gagtctcctcacggatacctctccgacgtagcttcccctcccatgacatcccccttccag
cagtcgcctcccatgtctctaaatcacctccaaggcaatggggatcacatgggccagatg
atgggtaaagatatgagctgcatgtctttcgaccccccacgtctctcccacatgcccgtc
tccagccccaacagtcagggcagagggggaggtcagtgcgactggatctcaaggatgcac
ccgggtgtgggccagcaggggggctacagccagcccatctcccacaacatgatgggggct
ctgcacggggtcagcacggccacgctgtctcagatcatgggctaccagaacatgcagacc
agccacctggtgatgcagcagcagcagcagcactcgcggcagctccagcaccagaactcc
agctccaccacgggggggctcaaccagagcttccccagcgtggatctgaacgacgggcgc
tccatgcccatcctcaccgtcatgccgcaggagacccagatcctcggcactcagttcctc
acccccccctcccaacacagctactctggccccatggaccacacccccaaccaccagctg
caggtgcccgatcaccccttcctcaccccttcccccggctcccccgaccaatggtctagc
tcgtccccacattccaacatgtctgattggtcggaaggcatctcgagcccacccacgagt
atccattcgcagatgaacctgatcccggagcagtttaagtag
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integrated database retrieval system
