Pseudochaenichthys georgianus (South Georgia icefish): 117465048
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Entry
117465048 CDS
T09629
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C-like isoform X1
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04020
Calcium signaling pathway
pgeo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117465048
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117465048
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117465048
Ion channels [BR:
pgeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
117465048
BRITE hierarchy
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
NMDAR2_C
ANF_receptor
MatE
Motif
Other DBs
NCBI-GeneID:
117465048
NCBI-ProteinID:
XP_033963793
EnsemblRapid:
ENSPGEG00000020449
LinkDB
All DBs
Position
19:complement(13016175..13110097)
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AA seq
1395 aa
AA seq
DB search
MAIPRGQPPPSPWPPLFLLLLYLLLISSPSPLQARPLLLQQSINVAVVFSGSSYQNEVRG
RLSGENFVDMPVVVSPVTVLVNDTNPRDLLTRLCDTMATEKLHGVVFEDDVGVGDDTQVA
EVAQILDFLSTQTALPIVGISGGSAVVIPFKAEGSSFLQMGASLEQQIVCMFKLMEEYDW
GEFAVITSLLPGYDTFVDIVQSYTDTSYFLWNLQDVLSLEMSVGSNDARTKRMLQQVDSQ
VLMAYCSYEEAQYLFQQAAEVGLLGPGYIWIIPSQAVGNPDSPPPASFPIGVIGVITDQW
RKSLRQRVREGVAIVAQGAESFKKLYGFIPEGQGDCTKLAKHSDNNTLFRHMLNVTWERK
DLSFNSQGFLTNPSMVLVALDRDRLWDKVGTFSRGILQVRYPVWPRYGSFLEQVSDDRHL
TVATLEEHPFVMVENVDPGTGTCVRNTVPCRRQSNQTGSSEDTEMNDIGHAESYTKLCCK
GFCIDILKKLSRTIKFSYDLYLVTNGKHGKLVRGTWNGMIGEVFYRRADMAIGSLTINEE
RSEIIDFSVPFVETGISVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFE
YLSPVGYNRSLVSAKTPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFF
AVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQKPHEHYPPFRFGTVPNGSTERNIRSN
YPDMHMHMMKYNQKGVEEALESLKTGKLNAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFA
TTGYGIALQKDSRWKRLIDLALLQFLGDGDTQRLETVWLSGICQNEKNEVMSSKLDIDNM
AGVFYMLLVAMGLSMLVFAWEHLLYWKLRHSLRKSRKLDYMLAISRGIYSCFKGVEEPGR
SSGLAKPDLTSNYAQQNMLKMLRTAKDLVSTANVETSLDHATKTIEHLSRHGGSLPVRIP
QVATETVPGGFAYITENHCPLTPPLTAVTSLKLQRGVTRPTPLRYTLPTRSSSCLYDRPL
PVSSLSSPHLAMGEPLPHQHPHHYQTTGRLYVDPHPHSPFIPYNDLQLPDIYASHPVSPH
QNQQVHEGFSRRKRRSKSFQCEDANVEGRKYRDQEKSNISSVYLSELKANHLQENHISAP
SVDCIYSEEVKCPRVENYGSWPPEDIVLRGRRRHRRPSFLKATWGSEQIRQMEESLSSLS
SQSQSALPDLFPCMLTQTAPAKPYNPAQLRNNLCLPRNQAYLHIREDHRRPNGRKGQRLR
YSHSAHLPTYGEAVQHGSGLGRGMVRRATSLLSRQYAHYLNSYPGLPLYHGPLDLQHHSQ
ASSSPVCQLLACGGGRCGSQRALLYQDNLYGAYGIYQGSQTGSEALAGQRAGGQPSGSPC
VLRPWRRVSSLESEV
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggccattcccaggggtcagcctcctccctctccttggcctcctctcttcctcctcctc
ctctacctcctcctcatctcctccccatcccccctgcaggcccggcccctcctcctccag
cagtcaatcaacgtagcggtggtgttcagcggctccagctaccagaatgaggtcagaggt
cgtctcagcggggagaactttgtggacatgcccgtggtggtcagtccagtgaccgtgctg
gtcaacgacaccaacccccgtgacctgctgactcgcctctgcgataccatggcaacggag
aagctgcacggagtcgtgtttgaggatgatgtgggtgttggtgacgacactcaggtggca
gaagtggcacagatcctggacttcctctccactcagacagctctgccaatcgttggcatc
agtggcggctctgcagttgtcataccattcaaggcggagggatcctcattcctgcagatg
ggagcgtctcttgagcagcagatcgtctgcatgttcaagctcatggaggagtatgactgg
ggcgagtttgcggtgatcaccagtttgctgccgggctacgacacctttgtggatatagtt
cagtcctacacagatacctcctatttcctgtggaacctgcaggatgttttgtctctggaa
atgtccgttgggtcaaatgatgcgaggacgaagcgcatgttgcagcaggtggattctcag
gtcctgatggcgtattgctcctatgaggaggcacagtacttgtttcaacaggctgctgag
gtgggtctgctggggccaggatacatctggatcatccccagtcaggccgtgggcaaccct
gatagccctccacctgccagcttccctattggtgttatcggtgtgattacggaccagtgg
aggaagagcctgcggcagagggtgagggagggtgtcgccattgtagctcaaggggctgag
agcttcaagaagctgtacgggtttattcctgagggacaaggtgactgcaccaaactggct
aaacactcagacaacaatactctgttcaggcacatgctgaatgtgacgtgggaaaggaaa
gatctgtcatttaacagccaaggcttcctcaccaatccttccatggtcctcgtcgctttg
gaccgtgacagactttgggacaaggtcggaacgttctcccgagggatccttcaggttcgc
tacccggtttggcctcgatacggcagctttctggagcaggtgtccgatgaccgccacctg
actgtggccacgctggaggagcatcccttcgtcatggtggagaacgtggacccgggcact
ggcacatgtgtccgcaacacagtgccctgcaggcgccagtccaatcaaacaggaagtagc
gaggacacagagatgaatgacatcggccacgcggagtcctacaccaaactgtgctgtaag
ggcttctgcatagatatcctgaagaaactgtcccgtaccatcaagttctcatatgacctc
tacttagtcaccaatggaaaacatggcaagctggtccgtggtacttggaacggcatgatt
ggggaggttttctacaggcgagctgacatggctattggctctctcactatcaatgaggag
cgttcggaaataatcgacttctctgtgccgtttgttgagacgggcattagtgtcatggta
gcccgcagcaatggcacagtttccccatctgcttttcttgagccctacagcccagcagtt
tgggtcatgatgtttgtgatgtgcctgaccgtcgtggctgtgacagtttttgtgtttgaa
tacttaagtccagtcggctacaaccgcagtctggtcagcgccaaaactcctggtggccca
acgttcaccatcgggaagtcagtgtggctgctgtggggtattgtctttaacaactcggtc
cccattgaaaacccgaaaggaacgaccagtaagatcatggtcctggtctgggccttcttt
gctgtcatcttcctggcttcctacactgccaacctggctgccttcatgatccaggagcaa
tatatcgacacagtgtctgggctttctgacaagaagttccagaaaccacatgagcattat
cctccttttcgctttgggacggtcccgaacgggagcacagagaggaacatccgcagcaac
taccccgacatgcacatgcacatgatgaaatacaaccagaagggggtggaagaagctcta
gaaagcctgaagactgggaaactgaacgctttcatctacgacgctgccgttttgaactac
atggctgggaaggacgagggctgcaagctggtgaccatcggcagcgggaaagtatttgcc
accacaggatacggcatcgctctgcagaaggactctcgctggaaacgtcttattgacctg
gctctgctgcagttccttggagacggagacacgcagcgcttggagacggtgtggttgtcg
ggcatctgtcagaacgagaagaacgaagtgatgagcagcaagctggacattgacaacatg
gcgggagtcttctacatgctgctcgtggccatgggcctcagcatgctggtctttgcctgg
gaacacttgctctattggaaactgagacactccctccgcaagtctcgcaaacttgactac
atgttggccatcagtaggggtatttatagttgtttcaagggagtagaggaacctgggcgt
tcatctggtttggccaaacctgacctaacctccaactacgctcaacaaaacatgcttaag
atgcttcgcactgccaaggacctggtctccactgccaatgttgagacgtctctggaccac
gccaccaagaccatagagcatttgagtcgtcatggcggcagcttgcctgttcgtattcca
caagtcgccacggagactgtaccaggaggatttgcctatattacggagaatcactgccca
ctaaccccacctttgaccgctgttacctctctgaaactccagaggggtgtgaccaggcca
acgccactacgctacacgctcccaactcgctcttcttcatgtctgtatgaccggccactt
cctgtgtccagcctcagtagcccccatctggctatgggtgaaccactccctcatcagcac
cctcaccactaccagaccacaggtagactctatgtagacccccatcctcattcacccttc
atcccctacaatgatctccaactacctgacatctacgcatctcacccggtctccccgcat
caaaaccagcaagtccatgagggcttctccagacggaaaagaaggtctaaaagtttccag
tgtgaggatgcgaatgtagaggggagaaaatacagggaccaggaaaagagcaacataagc
tccgtctatctgagtgagctcaaagccaaccacctacaagaaaaccacatctccgccccc
agcgttgactgcatctactcagaggaggtgaagtgtccgcgggtagagaactacggctcc
tggcccccggaggacatagtgctcagaggtagacgaaggcaccgccgcccctcattcctt
aaagcaacgtggggcagcgagcagatacgtcagatggaggaatccctgtcatccctgtcc
agccaatcacagtctgccctgccggacctgttcccatgcatgcttactcagaccgcacct
gcaaagccctacaaccctgcccaacttcgaaacaacctgtgcctcccacggaaccaggcc
tacctccacataagggaggaccataggaggcctaatgggcgtaagggccagaggctgcgc
tactcccactccgcccacctcccgacatacggagaggcagtgcaacatggcagtggttta
gggcgggggatggtacgcagagccaccagcttgcttagcagacaatatgcccactacctg
aactcataccctggactaccgctctaccatggccccctagacctgcagcaccacagccag
gcctccagcagccctgtgtgccagctgctggcttgtggtggtgggagatgtggaagccag
cgggctctgctgtaccaggacaatctatacggagcctatggcatctatcagggatcccag
actggatcagaggccctagcaggtcagcgagcagggggtcagccttcggggagcccctgc
gtacttcgtccctggcggcgggtttccagtcttgagtctgaggtctaa
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integrated database retrieval system
