Pseudochaenichthys georgianus (South Georgia icefish): 117467366
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Entry
117467366 CDS
T09629
Symbol
grin3ba
Name
(RefSeq) glutamate receptor ionotropic, NMDA 3B isoform X1
KO
K05214
glutamate receptor ionotropic, NMDA 3B
Organism
pgeo
Pseudochaenichthys georgianus (South Georgia icefish)
Pathway
pgeo04020
Calcium signaling pathway
pgeo04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
117467366 (grin3ba)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117467366 (grin3ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pgeo04040
]
117467366 (grin3ba)
Ion channels [BR:
pgeo04040
]
Ligand-gated channels
Glutamate (ionotropic)
117467366 (grin3ba)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
ANF_receptor
Motif
Other DBs
NCBI-GeneID:
117467366
NCBI-ProteinID:
XP_033966830
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All DBs
Position
22:3673756..3774709
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AA seq
1327 aa
AA seq
DB search
MVSLSGLWTYCLAPGRLPLLFLSARPLLLLLLFTVSSSPESCFPHSQTCHILARIGHTVR
LGALLPTRQPARIQNALNRALASLRHQGGGADSSTTPSQTPPLLPYNLSLEVVARTPAGG
DPESLSRSACQDLVVRGVSAVLAFPRSREELIQVEFLSSFLEIPFISILEDTEPLVTKNQ
FNLMMSARVPPSTLGSLLLAVLQGRDGDRDRGGRGDSGLGGAAVVCPGWEEGGEGLLSHL
QKHSGPNWHLWDIINLTLISGGGDRRVESGEEKKEDQREEEAFKILSGRFLRSPSPISSV
LLLGSDPECLSSVLRAAQRLAPSLPALQWIMGYPLSPDSLHTLGGPLGLLAYGEVGRKPI
SFYIRDALQLIGRAVTAATMVKPDLALIQNTVNCYDKNRHELPSSGQYLARFLSNTSFTG
ATGLIQVDPGLSRVLSSQLFHVWSLKRGALGQPAWVTVGHWTRGRLELEGGILGLVGGFG
SSQGQGLGAGVRGGDGQGDSSAGGRWRPGDSVAGHRLRVVTLVEHPFVFTREVDEDGLCP
AGQLCLDPRTNRSDLIQNLFTQLHNPNATITDWEGADLPEDLRKCCYGYCIDLLEKLAED
MGFTFDLYIVGDGKYGAVGGAGRWTGLVGDLLGGTADMAVSSFSINSARSRVIDFTSPFY
STSLGILVRSRDSAAPIGAFMWPLHWSMWVGIFVTLHLTALFLTLYEWNSPFGMTPHGRN
RLRVFSYSSALNLCYAILFGRTVATKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMV
GEKTFEQVSGIHDDKLHHPSMGFRFGTVRESSAEDYMKKSFPEMHDYMRRFNQPTTPEGV
HMLKTDPPALDAFIMDKALLDFEVSIDAECKLLTVGKPFAIEGYGIGLPQGSPLTRNVSE
FLSRYKSDGFMDMLHDKWYKVVPCGKRVFAVTETLQMGIQHFSGLFVLLCMGVVGALLTL
AGEHTFYHLVIPHLRRTHSLQYWLHTSQKIHRALHTTYEDVGKELTDLDQNPSSCISENC
TLHRKHHQPSPPSPPTSLPASTTAGDTCNSSPSHEPKEKRVHFDLETLHSYRLHTHTASV
RGRPGMVGRPGLGVGGWGMGGFTAPPPISLQANGGPVSSLASTGLVLSPLGSRVAQTSLW
EGELQDLQGKIETFRTQLRDALARRAEIQSSLERERSGLVRRDTSLERERQRIQTINTDR
SSSTQPKLPERDRTSQLQTLNNQQTGRPNQSGAPGTQPSSQLNTVNSLDRGRANQIRTVN
TLTGERTVHSRTSTSLEWSRVNQPGAVNITVQSRNTSSLDRQMVNLSRTLNALERTKANQ
SGVSSGT
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctctctctggactctggacctactgcctcgcccccgggagacttcctctcctt
ttcctctccgccagaccgctcctgctgcttcttttattcacggtctcttcctccccggag
tcctgcttcccgcactcgcagacgtgtcacatcctcgcccggatcggacacaccgtgcgc
ctcggtgcgctcttgccgacccggcagccggcacggatacaaaacgcgctcaaccgcgcc
ctggctagcctccggcaccagggtggaggggcagactcctccacgacaccctcccagaca
ccccccctgctgccctacaacctgagcctggaggtggtggctcgcacgcccgcgggaggc
gacccggagtcgctgtcccgcagcgcctgccaggacttggtggtcaggggggtgtccgcg
gtgctcgccttcccccgctccagagaggagctgatccaggtggagttcctctcctctttc
ctggagatccctttcatatccatcctggaggacacagagccgcttgtgactaagaaccag
ttcaacctgatgatgtcagcccgtgtccctccgtccaccctgggcagtctgctgctggcg
gtcctgcagggcagagacggggaccgggacagagggggccggggggacagcggcttggga
ggagctgcagtggtctgccccggatgggaggaggggggtgaagggttgctgtctcacctg
cagaagcacagcggtcctaactggcatttgtgggacatcatcaacctgaccctcatctct
gggggtggggacagaagggtggagagcggggaggagaagaaggaagatcagagggaagag
gaggcttttaagatcctatctggacgcttcttgcgctccccctcccctatctcctccgtc
ctcctcctgggatctgaccccgagtgtctctcctccgtcctgcgggctgctcagcggctc
gctccatcactaccagcgctgcagtggatcatgggatatcccttgtctccagattcgctc
cacactctgggaggtccccttggactactagcctacggggaggtaggccgcaagccaatc
agcttctacatcagggatgctttgcagttgattggacgtgcggtcactgcggcaaccatg
gtgaagccggacctggcgctgattcagaacacggtgaattgttacgacaaaaaccggcat
gagctcccctcttcaggacaatatctggccaggtttctctccaacacttccttcaccggg
gccacgggtctcatccaggtggatcctggcctctccagggtcctctcctcgcagctgttc
cacgtgtggagcctgaagaggggcgcgctcggtcagccggcctgggtgacagtaggccat
tggacccggggcagactggagctggaaggggggattctgggactggtgggagggttcggg
agcagccagggccaaggcctcggagccggggtgaggggaggggacggccagggggacagt
agcgctgggggtcgctggaggccgggagattcggtcgcgggtcaccgtctgagggtggtg
acgctggtggaacacccgtttgtcttcacgcgggaggtggacgaggacgggttgtgtcca
gcgggtcagctctgcctggaccccagaaccaaccggtccgaccttatccagaacctcttc
actcagctgcacaaccccaacgccaccatcacagactgggagggagcagacctaccggag
gacctgaggaagtgctgctacggttactgcatcgacctgttggagaaactggcagaggac
atgggtttcacctttgacctttacattgtgggagacgggaagtacggagcagtgggcggg
gcggggcgctggacggggctcgtcggggacctgctggggggaacagcagacatggcggtc
agctccttctccatcaactcagccaggagccgagtcatcgacttcacctcgcccttctac
tccaccagcctgggcattctggttcgcagccgggactctgcagcccccatcggagccttc
atgtggcccctccactggtccatgtgggtgggtatttttgtcacgctgcacctcaccgcg
ctcttcctcaccttgtacgagtggaacagccccttcggcatgacgccacatggcaggaac
aggctgcgagtcttctcttactcctccgccctcaatctctgctacgccattctgttcgga
cgtaccgtcgccaccaagactcctaaatgctggacggggcgcttcctgatgaacctctgg
gccatcttctgtttgctggtgctgtccagctacaccgctaacctagccgcggtcatggtc
ggggagaagaccttcgagcaggtgtcaggaattcatgacgacaagctgcaccatccgtcc
atgggcttccgctttgggacggtgagggagagcagcgctgaggattacatgaagaagagc
tttccggagatgcacgactacatgaggcgcttcaaccagcccaccacccccgaaggagta
cacatgctgaagacagatcctccggccctggatgccttcatcatggacaaagcccttttg
gattttgaggtctctatcgacgctgagtgcaaactactaacagtggggaagcctttcgcc
attgaaggttacggcatcggcctgccgcagggctctcctctaacccgcaatgtgtcagag
tttctgagtcgctacaagtctgacggcttcatggacatgctacatgacaaatggtataag
gtggtcccctgcgggaagcgagtcttcgccgtcactgagactctacagatggggatccag
catttttccggtctgttcgtgctgctgtgtatgggggtggtcggagccctgctgaccttg
gcaggtgaacacaccttctatcacctggtcatccctcacctccgacgcacacactctctg
cagtactggctgcacaccagccagaaaattcacagagccctccacaccacgtatgaggat
gttgggaaggagctgacggaccttgaccaaaacccctcctcttgtatctcagagaactgc
accctccacaggaaacaccatcagccttctcccccatctcctcccacatccctccctgct
tccactacagctggagacacctgcaactcctctccatcccatgagcccaaggagaaacgc
gtgcactttgacctggaaaccctgcacagctaccgcctgcacacacacaccgcctcagtg
cgcggccggcccgggatggtgggccgtcctggactcggtgtaggagggtgggggatgggg
ggttttaccgcccctccgccgattagcctccaagccaacggaggccctgtctcctccctg
gcttccacaggcttggtgctctctcctctggggagcagggtcgctcagacgagcctgtgg
gagggggagctccaggacctgcaggggaagatcgagacgtttcgcacccagctgagagac
gccctggccaggagggcagagatccagagcagcctggagagagagaggagcggactcgta
cgcagggataccagcctggagagggagaggcagaggatacagactataaacacggacaga
agtagctccactcagcccaaactcccagagagagacaggaccagccaactgcaaaccctc
aataatcaacagacagggaggcctaaccaatcaggcgctcctgggactcagccaagcagc
caattaaacacagtgaacagtttggacagagggagagccaaccagatacgcactgttaat
actttgaccggagaaaggactgtccattcgcgcacttccaccagtttggagtggagtaga
gtcaaccaaccaggtgctgtaaacatcactgtccaatcacggaacacttctagcctggac
agacagatggtgaacctatcacgcactctgaacgctttggagaggacaaaagccaaccaa
tcaggtgtgagcagtgggacttga
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