Panacibacter ginsenosidivorans: FRZ67_22960
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Entry
FRZ67_22960 CDS
T06131
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pgin
Panacibacter ginsenosidivorans
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgin03009
]
FRZ67_22960 (rimO)
Enzymes [BR:
pgin01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
FRZ67_22960 (rimO)
Ribosome biogenesis [BR:
pgin03009
]
Prokaryotic type
ribosomal protein modification factors
FRZ67_22960 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
QEC70020
UniProt:
A0A5B8VF21
LinkDB
All DBs
Position
5448138..5449448
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AA seq
436 aa
AA seq
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MKSRTLQKDKVNIITLGCSKNLVDSEVLSGQLKANEIDVVHENSKLDHNIVVVNTCGFID
KAKEESVNTILDQVELKKKGKLDKVYVTGCLSERYRSDLEAEIPEVDAWFGTLELPLILK
QFDADYKSELLGERMLGTPKHYAYLKISEGCNRTCAFCAIPLMRGAHVSRSMEDLVKEAE
SLVRRGVKEIMLIAQELTYYGLDLYKKRMLAELLNKLADVKGIEWIRLHYAYPNKFPLEV
LDVMRERSNICNYLDMPLQHASNNMLKAMKRQSTRQEMEELIAAIREKNPGICLRTTLIA
GFPGETREDVEELKDFLTRMRFDRVGIFTYSHEEGTSGYALIDDVPAEEKQARAQEIMEL
QQEISYEKNVEKVGKVFKVIIDKKEAGRYLGRTEFDSVEVDNEVVIHSTKKLPVGEFVNV
KITKAYDYDLEGEVIL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaagaacattacaaaaagataaggtgaacattataacacttggttgcagtaaa
aacctggtggatagtgaagtgctgagtggccagctgaaagcaaatgaaattgatgtggtg
catgagaacagtaaacttgatcataacatagttgtggtaaatacttgcggttttattgac
aaggcaaaagaagaaagcgtaaatactattctcgaccaggttgaattaaaaaagaaaggt
aaacttgacaaagtttatgttaccggttgtttaagtgaacgttaccgtagcgatcttgaa
gcggaaattccagaagttgatgcgtggtttggcactcttgaattaccactcattttaaaa
caatttgatgctgattataaaagtgagttgcttggtgaacgcatgcttggcacaccaaaa
cattatgcttatttaaagatcagtgaaggttgtaacagaacctgtgcattctgtgcaatt
cctttaatgcgtggtgcgcatgtcagcaggtcgatggaagatttggttaaagaagccgag
agccttgtccggcgtggcgttaaagagatcatgcttattgcgcaggaacttacttattat
ggtctcgatctttacaagaaaagaatgcttgcagaattattgaataaactggctgatgta
aaaggaattgaatggattcgtttacattatgcttaccccaataagtttccgcttgaagtg
ttggatgttatgcgtgagcgcagcaatatctgtaactatcttgatatgcctttgcagcat
gcaagcaataacatgctgaaagcaatgaagcgccaaagcacaagacaggaaatggaagaa
ttgattgcagctattcgtgaaaagaatccgggcatttgtttgcgcacaactttaatagca
ggtttccctggcgagacaagagaagatgtggaagagctcaaagattttcttacacgtatg
cgttttgatcgtgtcggcattttcacttacagtcatgaagaaggaacgagtggttatgct
ttaattgatgatgtgcctgcggaagaaaagcaggcacgtgcacaggagatcatggaactg
cagcaggaaataagttatgaaaagaatgtagaaaaggtaggtaaggtatttaaagtaatt
atcgacaaaaaggaagctggccgctatcttggccgcactgagttcgatagtgttgaagta
gataatgaagtggtaattcactccacaaaaaaattgcctgttggtgagtttgtaaatgta
aagatcactaaagcgtatgattatgatttggaaggagaagtgattttataa
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