Pedobacter ginsengisoli: CPT03_14725
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Entry
CPT03_14725 CDS
T05145
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pgs
Pedobacter ginsengisoli
Brite
KEGG Orthology (KO) [BR:
pgs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgs03009
]
CPT03_14725 (rimO)
Enzymes [BR:
pgs01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
CPT03_14725 (rimO)
Ribosome biogenesis [BR:
pgs03009
]
Prokaryotic type
ribosomal protein modification factors
CPT03_14725 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
ATP57634
UniProt:
A0A2D1U7U6
LinkDB
All DBs
Position
3578519..3579853
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AA seq
444 aa
AA seq
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MNTKTSTKIIPVKKPKINVITLGCSKNTYDSEVLMGQLRGNSLDVIHESNQVGKDDIVVI
NTCGFIDNAKQESIDTILQYSQLKDEGKVAKVIVTGCLSERYKPELEAEITNVDAYFGTN
DLNNLLHSLGANYKHELIGERLLTTPSHFAYFKIAEGCNRPCSFCAIPLMRGKHVSRDME
ELVNEAKILAANGTKELILIAQDLTYYGLDIYGKRNLDELLRRLSDVRGIEWIRLQYAYP
SGFPMEILDAMNERENICKYLDMPLQHITDNMLKSMRRGITKQKTIDIVNQIRDKVPGIA
MRTTLICGYPGETEQDFEEMLSWVEETRFDRLGCFTYSHEEKTHAHSLIDDVPEEVKQAR
VDAIMELQQGISFDINQDKIGKTYKVLVDRKEGDFFVGRTEFDSPEVDNEVLIDAATGYA
ANGTFVNVKIDRAEDFDLYGQIVK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaaacttccacaaaaataatccctgttaaaaaaccaaagattaacgtaatc
acattgggctgttccaaaaacacttacgattctgaggttttaatgggccaattgcgcgga
aatagtttagatgttattcatgaatctaaccaggttggcaaagacgatattgttgtaatt
aatacctgtggttttatagataatgcaaaacaagaatctattgataccatattgcaatac
agccagttaaaggacgaagggaaagtggcaaaagtaattgtaaccggatgcctttcggaa
cgctataagcctgagttagaagccgaaattaccaatgttgatgcttattttggcaccaat
gatttaaataacctgctccactctttaggtgcaaattataagcatgaattaattggcgag
cgtttgctaaccaccccgtcacacttcgcttattttaaaattgcagagggttgtaacaga
ccttgctctttttgcgctattccgctgatgcgtggcaaacacgtatccagagatatggaa
gagctggtaaatgaagctaaaatattggccgctaacggtaccaaagaacttatactaatt
gctcaggaccttacttattatggtcttgatatttatggaaaacgtaatcttgatgagtta
ttacgccgactatctgatgtaaggggtattgaatggatcagactgcaatacgcctaccct
tctggctttccgatggaaattctggatgcaatgaatgagcgtgagaatatttgcaagtat
ttggatatgccattgcagcatattacagacaatatgctgaagtcaatgcgtcgtggtatt
accaagcaaaagactatagatattgttaatcaaattagagataaggtaccgggtatcgca
atgcgtactactttgatttgcggatacccaggagaaactgagcaggattttgaagaaatg
cttagctgggttgaggaaacccgtttcgacagattaggatgctttacttactctcatgaa
gaaaaaactcatgcacatagtctgattgatgatgtacctgaagaggtaaaacaagcacgt
gttgatgcaattatggaattacaacaaggaatttcttttgatataaaccaagataaaata
ggcaaaacctataaagttttggttgacagaaaagaaggcgacttctttgttggccgtact
gaatttgactcgccagaggttgacaatgaagttttaattgacgcagctaccggctatgcg
gcaaatggaacttttgtaaatgttaagattgatcgtgccgaagattttgatctatatgga
caaattgtaaaataa
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