Pantherophis guttatus (corn snake): 117660070
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Entry
117660070 CDS
T07329
Symbol
POLR2A
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
pgut
Pantherophis guttatus (corn snake)
Pathway
pgut03020
RNA polymerase
pgut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117660070 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
117660070 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgut03021
]
117660070 (POLR2A)
03400 DNA repair and recombination proteins [BR:
pgut03400
]
117660070 (POLR2A)
Enzymes [BR:
pgut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117660070 (POLR2A)
Transcription machinery [BR:
pgut03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117660070 (POLR2A)
DNA repair and recombination proteins [BR:
pgut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117660070 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
117660070
NCBI-ProteinID:
XP_060541221
EnsemblRapid:
ENSPGUG00005017024
LinkDB
All DBs
Position
Unknown
AA seq
1962 aa
AA seq
DB search
MHGGAPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEAGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILTKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPXPNLSIDQVGVPRSIAANMTFAEIVAPFNIDRLQELVSRGNSQYPGAKYIIR
HNGDRIDLRFHPKSSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CVRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMRE
DRDVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINTRLPSDLHPIKVVEGVKELSKKLV
IVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPD
FDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNITGLGVGGPTGM
FFGSAPSPMGGVSPATTPWNQGATPAYGAWSPSVGSGMTPGAASFSPSAASDASGYSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGVYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP
TYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcgcgccctccggggacagcgcgtgcccgctgcgcaccatcaagcgcgtg
caattcggcatcctcagcccggatgagatgaaacggatgtcggtgaccgaagcaggcatc
aagtacccagagaccacggaaggcggtcgccccaaactcggggggctgatggatcctcgc
cagggggtcatcgaaaggactgggcggtgccagacgtgcgcaggcaacatgactgaatgt
cctggccatttcggccacatcgaactggccaagccggttttccacgtcggctttttagga
aaaaccatgaaagtccttcgctgcgtttgtttcttctgctccaaactgctggtcgactcg
aacaatccgaaaatcaaggatatcttgaccaagtccaaaggccagccgaagaagcgctta
acccacgtctacgatctctgcaaaggcaagaacatctgcgaggggggagaggagatggat
aacaaatttggggtggagcagcccgaaggcgacgaggacctcaccaaggaaaagggccac
gggggctgcgggcgctaccagccgaggatccgccgctcgggcctggagctgtacgccgag
tggaagcacgtgaacgaggactcccaagagaagaagatcctgctcagccccgaacgggtc
cacgagatcttcaagcggatctcggacgaggaatgcttcatcctgggcatggatcccaaa
tacgcccggccggagtggatgatatgcaccgtgctccccgtccctccgctctccgtcaga
ccggccgtcgtcatgcaaggctcggctaggaatcaggacgacttgactcacaagctggcc
gacattgtcaaaatcaacaaccagttgcggcggaacgagcagaacggggcggccgctcac
gtcatcgcggaagacgtcaagctcctccagttccacgtggccaccatggtggacaatgaa
ctgcccggcctgccccgagcgatgcaaaaatccggccgtcctctgaagtccttgaaacag
cgcctgaaagggaaggaaggccgcgtgcgagggaacctgatgggcaaacgggtggatttc
tccgcccggaccgtcatcacgccgnatcccaacctctccatcgaccaggtgggcgtgccg
cgctccatcgccgccaacatgaccttcgccgagatcgtggcgcctttcaacatcgacaga
ctgcaggagctggtgagccgagggaacagtcagtatcccggagccaaatacatcatccgg
cacaacggagacaggattgatctccgcttccacccgaaatccagcgaccttcacctgcag
attgggtacaaggtggagcgacacatgtgcgacggagacattgtcattttcaaccggcaa
cccacgctccacaaaatgtccatgatgggccaccgagttcgtatcttgccctggtccact
ttccggctcaacctcagtgtgaccaccccatacaacgccgacttcgacggcgacgaaatg
aacctccaccttccccagtcgttggagacccgggcggagatccaagaactggccatggtg
ccccgtatgatcgtcacgccccagtccaacaggcccgtcatgggcatcgtgcaagacaca
ctgacggccgtccgcaagttcaccaagagggatgtcttcctggagaggggggaagtgatg
aacctgctgatgtttctctccacctgggatggcaaagtgccccagccggccatcctgaag
cctcgcccgctctggaccgggaagcaaatcttctccctcatcatcccgggacacatcaac
tgtgtccggacacacagcacccatccggacgatgaagacagcggcccctacaagcacatc
tcaccaggagacaccaaggtcattgtggagaacggagagctgatcatgggcatcctgtgc
aagaagtccctgggcacctcggccggctctctcgtccacatctcctacctggagatgggc
cacgacgtcacccgcctcttctacagcaacatccagacggtcatcaacaactggctgctg
atcgaaggacacaccattggtatcggggactccatcgctgatgccaagacctaccaggac
atccagaacactatcaagaaagccaagcaggatgtgatagaggtcatcgagaaagcccac
aacaacgagctggagcccacccctggcaacaccctgcgccagacctttgagaaccaggtc
aaccgcatcctgaacgacgcccgagacaagaccggctcctctgcccagaagtccctctcg
gagtacaacaacttcaagtccatggtggtctcgggggccaaaggctccaagatcaacatc
tctcaggtcatcgcagtggtggggcagcagaacgtggaggggaagcgcatccccttcggc
ttcaagcatcgcaccctgccccacttcatcaaagacgactacgggccggagagcaggggc
tttgtggagaattcatacttggccggcctgacccccaccgagttcttcttccacgccatg
ggaggccgagaagggctgatcgacacggccgtcaaaacggccgaaacgggttacatccag
cgtcggctgatcaaatccatggagtcggtcatggtgaagtacgacgccaccgtccgcaac
tccatcaaccaggtggtgcagctgcgttacggcgaggatgggctggccggagagagcgtg
gagttccagaatctggccaccctcaagccttccaacaaagcttttgagaagaagttcaag
tttgattacaccaacgagcgggctctgcgccgcaccctgcaggaggagatggtgaaggac
atcctcagcaacgcccacatccagaacgagctggagagggagtttgagaagatgagggag
gaccgggacgtgttgagggttatcttccccacaggagacagcaaggtcgtcctcccctgc
aacctgcttcgtatgatctggaacgcccagaaaattttccacatcaatacgcgtctcccc
tccgacctgcaccccatcaaggtggtggaaggcgtgaaggagctgagcaagaaactggtg
attgtgaatggcgacgacccactgagcaagcaggcccaggaaaacgctaccctgctgttc
aacatccacctacgttccaccctctgcagccgtcgtatgattgaggaattccggctgagc
ggagaagccttcgactggctgctgggagaaatcgaatccaagttcaaccaggccattgcc
catcctggtgagatggtgggggccttggccgcccagtccctgggagaacctgccacccag
atgaccctcaacactttccactatgctggggtctctgccaaaaacgtgaccctgggggtg
cctcggctgaaggaactgatcaacatttccaaaaaacccaagaccccttctctgacggtc
ttcctcctgggacagtccgcccgggacgctgagagggccaaggacatcctttgccgcttg
gagcataccacccttcgcaaggtgacggccaacacggccatctactacgaccccaaccct
cagaacaccgtggtggccgaggaccaggagtgggtgaacgtttactatgagatgcccgac
ttcgacgtcacccgcatctccccttggctgctgagggtggagttggaccgcaaacacatg
acggaccgaaagctcaccatggaacagatcgccgagaagatcaatgccggctttggagat
gacctcaactgcatcttcaacgacgacaacgctgagaagctggtgctgcgcattcgaatc
atgaacagcgacgagaacaagatgcaggaggaggaagaggtggtggacaagatggacgac
gacgttttcctgcgctgcatcgaatccaacatgctgacggacatgacccttcaaggcatt
gagcaaatcagcaaggtgtacatgcacctgccccagaccgacaacaagaagaaaatcata
atcacggaagacggcgagttcaaagccctccaggagtggatcctggaaacggacggcgtg
agcctcatgcgcgtgctgagcgagaaagacgtggaccccgtgcgcaccacctccaacgac
atcgtggagattttcacggtgctgggaattgaggcggtgaggaaggccctggaacgggag
ctgtaccacgtcatctccttcgacggctcctacgtcaactaccgccacttggccctgctc
tgcgacaccatgacctgccgcgggcacttgatggccatcacgcgtcacggcgtcaaccgc
caggacacggggccgctcatgaaatgctccttcgaagagacggtcgatgtcttgatggag
gcggctgcccatggcgagagcgaccccatgaaaggggtctcggagaacatcatgctggga
cagctggcccctgcgggcaccggttgcttcgacctgcttttggacgccgaaaaatgcaaa
tttggcatggagattcccaccaacatcaccgggctgggcgtcgggggccctaccggcatg
ttcttcggctctgcgcccagccccatgggcggggtgtccccggccacaaccccgtggaac
caaggtgccacgccagcctacggcgcctggtcacccagtgtggggagcggaatgaccccc
ggggccgccagtttctcccccagcgcggcttccgatgccagcggttacagtcccgggtat
tcccctgcctggtcgcccaccccaggctcccccggctctccgggaccttccagcccttat
attccgtctccagggggcgccatgtctcccagctactccccaacctctcccgcctacgag
ccacgctcgcccggggtgtacaccccgcaaagccccagctacagccccacctctccttcc
tacagccctacctctccttcgtactctccaactagtccgaattacagccccaccagcccc
agctacagccccacctccccgagttactctccgacgtcacccagttacagcccaacgtcg
cccagctacagcccgactagccccagctacagcccgacgtcgcctagttattctccaacc
agccccagctacagcccaacgtcacccagctacagcccaacgtcgcccagctacagccca
accagtcctagctacagcccgacatcgcccagctacagcccaaccagtcctagctacagc
ccaacgtcgcccagctacagcccgacttctcccagctacagcccaacctcccctagctac
agccccaccagccctaattacagcccaacctctccaaactacaccccaacttctccgagc
tacagcccgacttcgcccagctacagcccgacttctcctaattacaccccgacgtctcca
aactacagcccgacatctcccagttactccccgaccagcccttcctacagtcccacctcg
cccagctactccccctccagcccccgctacaccccacagtcccccacttacaccccgtcg
tcgcctagctacagccccagctcgcccagctacagcccgaccagccccaagtacaccccg
accagcccatcctacagccccagctctccggaatacaccccgactagccccaagtacagc
ccgaccagccccaagtacagcccgacttcgcccacctacagcccgaccacgccgaaatac
agcccgacgagccccacctactcgccgacgtcgcccgtctacaccccgacgtcgcccaag
tacagcccgacttcgcccacctactcgcccacctcccccaagtacagcccgacctcgccc
acctactcgcccacctcccccaaaggctccacctactccccgacctctcccggctacagc
cccacgtcgccgacctacagcctcaccagcccggccatcagtccagacgacagcgacgaa
gagaactga
DBGET
integrated database retrieval system
