Polymorphum gilvum: SL003B_3646
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Entry
SL003B_3646 CDS
T01458
Symbol
dapE
Name
(GenBank) Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase-like deacylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
pgv
Polymorphum gilvum
Pathway
pgv00300
Lysine biosynthesis
pgv01100
Metabolic pathways
pgv01120
Microbial metabolism in diverse environments
pgv01230
Biosynthesis of amino acids
Module
pgv_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pgv00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SL003B_3646 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pgv01002
]
SL003B_3646 (dapE)
Enzymes [BR:
pgv01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
SL003B_3646 (dapE)
Peptidases and inhibitors [BR:
pgv01002
]
Metallo peptidases
Family M20
SL003B_3646 (dapE)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
DUF1580
Motif
Other DBs
NCBI-ProteinID:
ADZ72067
UniProt:
F2J2P3
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All DBs
Position
complement(3951577..3952758)
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AA seq
393 aa
AA seq
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MTDMQDIAVSLAQDLIRCPSVTPAEGGALQLLQERLEGAGFSVQRLTFSDTDTPDVENLF
ASIGHGAPHFVFAGHTDVVPAGATADWSHGPFDGVIDAGLLYGRGAVDMKGGIAAFAAAA
LAFVAERGTDFGGTISFLITGDEEGPAVNGTVKLLDWARAQGHVFDACIVGEPTNPVRLG
DAIKIGRRGSLSGIVAVTGIQGHVAYPHLAHNPIPNLLRLLAALQALKLDEGNARFEPSN
LEIVNLEVGNAAFNVIPARAEARFNIRYNDEWTLDGLKAKVTAVIEAAADRSCDWSLEFR
RDASESFLTRDDRLIEGLADAVEAETGQRPDLSTGGGTSDARFIKDYCPVVEFGLVGQTM
HKVDECVAVVDLKRLAAIYRRFLDGYFPVAGAE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatgcaagatatcgccgtttccttggcccaggacctgatccggtgcccgtcg
gtgacgccggccgaaggcggcgctctgcaactgctgcaggagcgactggagggtgcaggc
ttctccgttcagcggctgacattttctgacaccgatacccctgacgtcgagaacctgttc
gcgtcgatcggccatggcgctccccatttcgtcttcgccggccataccgacgtggttcct
gccggagcaactgccgactggagccacggtcccttcgacggcgtcatcgacgccggcctg
ctttatggccgcggcgcggtcgacatgaagggcggcatcgcggcctttgccgccgccgcc
ctcgccttcgtcgccgagcgggggaccgacttcggcggtacgatctccttcctcatcacg
ggcgacgaagaagggcctgcggtcaacggcacggtcaagctgcttgactgggcgcgtgcc
cagggacatgtcttcgacgcttgcatcgtcggcgagccgaccaatccggtgcgcctcggc
gatgccatcaagatcggccgccgcgggtcgctgtcgggcattgtcgccgtgacgggcatc
caggggcatgttgcctatccgcatctggcgcacaatccgattccgaacctcttgcggctc
ctcgctgcgctgcaggcgttgaagctcgatgagggcaacgcgcggttcgagccgtccaat
ctcgagatcgtcaatctcgaggtcggcaacgccgccttcaacgtcattccggctcgggcg
gaggcgcgcttcaacatacgctacaacgacgagtggaccctggacggactgaaggcgaag
gtgacggccgtgatcgaggcggccgctgaccgatcctgcgactggtcactggagttccgg
cgcgatgccagcgaatccttcctcacccgcgacgaccggctgatcgagggacttgccgac
gcggtcgaggccgagacgggtcagcgtccggacctgtccaccggtggcggcacgtccgat
gcgcgcttcatcaaggactattgcccggtggtcgaattcggacttgtcgggcagaccatg
cataaggtcgacgaatgcgtcgcagttgtcgatctcaagcgactggccgcgatctaccgc
cggttcctggatggctattttcccgtggccggagcggagtga
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