Pectinophora gossypiella (pink bollworm): 126380296
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Entry
126380296 CDS
T09293
Name
(RefSeq) probable DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126380296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgw03400
]
126380296
DNA repair and recombination proteins [BR:
pgw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126380296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Mt_ATP-synt_B
XRCC4
Motif
Other DBs
NCBI-GeneID:
126380296
NCBI-ProteinID:
XP_049885566
EnsemblRapid:
LOC126380296
LinkDB
All DBs
Position
Z:22982054..22997683
Genome browser
AA seq
1125 aa
AA seq
DB search
MSKRNSVGSKNTLFNYFSKTPPANKKAKLQNGDTDGSPKLDSTLHNETDSKNDNKKRERH
TTPSPKVYNYSDSEDEVPIAPKRRKRIRLNPIDSDDSDTENKVDNKVSSVKEKISVEKKL
HDSFKYEANQTPKNKKSTSDGPKPTTTKFEHVEKDTAPIADVGNWVHCKLEWLKPDKIRD
AQKRRPDHADYDPTTLYVPPDFYNNQTPAHRQWWEMKSSHFDCVLFFKVGKFYELYHMDA
AVGVNELGFSYMKGDFAHSGFPESAYARMASTLVSKGYKVARVEQTETPDMMQERCKKLR
QSSKWDKVVRREICQVTLRGTQVCGLQDPGPGEASAAYMLAITEEEGQGSSTYGVCFVDT
SIGLFHLGQFKDDKHSSRLLTTLSHYPPALIVYERKSTTARTCKLLSTHCHGARREARTM
PPPEKTLKTLAEQYYKTNADGDWPEGLKQFLHEGDALGLTPAANCFLAVKALGGCVTYLT
ECLLDVQVLGMSQFASYEPPDVASSQSSQSQGDKPAKWEGGSVMVLDAITLRNLRIVQDV
GCLYDKLNYCSTAMGKRLLYQWVCAPSCNLNVIKERQEAVRVLFDQQELTQNVKNILTTL
PDLERLLAKVHSLGNLLKSKTHPDSRAIFYEEKIYSKRKVLDFISVLNGFTAALGVSEMF
TDTDSALLKTITQFSPEGKYPDYRETLKFFKDGFDQTEAEKAGVILPGEGMDPEYDDTLR
TIKEIDDELKEYLAEQEKYFRCRLAYVGSDKKRYQIEVPVSAASKAGADYQLEGTRKGYK
KFSTAETREFLARMIAAEEQKRVVLKDLSRRIFENFSSHYAQWEAAVQCIATLDILLAFA
EFARQQSTDVCLPIVTMGDSKPYINITEGRHPCIPIVNDFVPNDAELGTRGPSLLLLTGP
NMGGKSTLMRQVGLLVVLAQLGSYVPAQACSLSVVDRIFTRLGASDDILSGQSTFLVEMN
ETAAIVKHATQHSLVLLDELGRGTSTYDGTAIASGVCAELAARGCRVVFSTHYHSLVHHF
ATHPGVILGHMACMVETDESTPDSEDHIPEETITFLYKLTPGACPKSYGFNAARLAGVSK
HITRRAHQISKRLEKEATCVRAFRDILKMETKGKDIRELLAALCI
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgtaacagcgttggttctaaaaacacattgttcaattatttctccaagaca
ccgcctgcgaataagaaagctaagcttcaaaatggagatactgatggaagtccaaaactt
gattctactctgcacaatgaaacagactcgaaaaatgataacaaaaagcgcgagcgtcat
acaactccatcaccaaaagtctacaactacagtgacagcgaagatgaagtgcccattgct
cctaaacgaagaaagcgcatcagactcaaccctatagactccgatgactcagatactgag
aacaaagtagacaataaagtgtcatccgtgaaagagaagatatctgtggagaagaaactt
catgacagcttcaaatatgaagcaaaccaaactccgaaaaacaaaaagtctacaagtgat
ggccctaagccgacaacaacaaagttcgagcatgttgaaaaggatacagctccaatagct
gatgtgggcaactgggtgcactgcaagcttgagtggctcaagcccgacaagatccgtgat
gcacagaagaggaggcctgaccacgccgactatgatcccaccacactatatgtcccgcct
gacttttacaataatcagactcctgcacatagacagtggtgggagatgaaatcgtcgcac
tttgattgtgtgctgttcttcaaagtgggcaagttttacgaactgtaccacatggacgcc
gcagtcggagttaatgagcttggcttctcttatatgaagggcgacttcgcgcactctggt
ttcccagagagtgcgtatgcgcggatggcgtcgacgctcgtgtcgaaagggtacaaggtg
gcgcgcgtcgagcagaccgagacccctgatatgatgcaggagaggtgcaagaagttgcgt
cagtcgagcaagtgggacaaggtggtgcgaagggagatctgccaagtgactctccggggc
acgcaggtgtgcggcctccaggaccccggcccgggcgaggcgtccgctgcttacatgctg
gcaattactgaggaggaggggcaaggcagcagcacatacggcgtgtgttttgtggacacg
tccatcgggctattccacctcggacagttcaaggacgacaagcactcctcgcggttgcta
accacactgtcacactacccgcctgctttgatagtgtacgagcgtaagtcgacgaccgcc
cgtacttgcaagctgctgagcacacactgccacggcgcgcggcgcgaggcgcggactatg
ccgccgcccgagaagacgctcaagactctcgctgagcagtactacaagaccaatgctgat
ggcgactggccggagggactcaagcagttcctacacgaaggtgacgcgttaggcctaacg
ccggccgcgaactgcttcctggcagtgaaggcactgggaggctgcgtgacgtaccttacc
gagtgccttctagatgtccaagtcctgggcatgtctcaattcgcatcatacgagcctcca
gacgtcgccagcagtcagtcgagccagtcgcaaggggacaagccagcgaagtgggagggc
ggtagtgtcatggttttggacgccataactctcaggaatctcagaatagtgcaggatgtc
ggatgcctgtatgataagctcaactactgctccactgctatggggaaaaggttgctatac
cagtgggtgtgcgcaccgagttgcaacctcaacgtgataaaggagcgccaggaggcggtg
cgcgtgttgttcgaccaacaggaacttacccagaatgtcaagaatatcctcaccacactg
ccggacctggagcgactactagccaaagtacacagtctcggcaacttattgaagtcaaaa
acgcacccggactcacgcgccatcttttacgaggagaaaatatactccaaacgcaaggtt
ctggacttcatatccgtgctgaacggcttcaccgcggccctcggcgtgtcggagatgttc
accgacacggactccgctttgctgaagactatcacacagttcagtcccgagggaaagtat
cctgattatagagaaacgctcaagttcttcaaggatggcttcgaccaaactgaggcggag
aaggcgggcgtgatcctccctggcgagggcatggaccctgaatacgacgatacgctgcgt
accatcaaggagatagatgatgagttgaaggaatatctcgccgagcaagagaagtacttc
cgatgtcggctggcgtacgtggggtcggacaagaagcgataccagatcgaggtgccggtg
tcggcggcatccaaggccggcgccgactaccagctcgaaggcaccaggaaaggatacaag
aagttctccactgctgagaccagggagttcctggcacgcatgatagcggctgaggaacag
aagcgcgtggtcctcaaagacctgagccgtcgaatcttcgagaacttttcgtcacactac
gcgcagtgggaggcggcagtacagtgtatcgccaccctcgacatactactggcgttcgcg
gagttcgcgcgacaacagagcacggatgtatgcttgcctatcgtcactatgggggatagt
aagccgtacataaacatcacggagggccgtcacccgtgcattccgatcgtgaacgacttc
gtgcccaacgacgcggagctgggcacgcgcgggcccagcctgctgctgctcactgggccc
aacatgggcggcaagtccacgctcatgcggcaagtgggcctcctcgtggtgctagcgcag
ctgggtagctacgttcccgcacaagcgtgctcgctgagcgtcgtggaccgcatcttcacc
cgtctcggcgcctcggatgacatcctttccggccagtccaccttcctcgtcgagatgaac
gagactgccgccattgtcaagcacgctacacagcactcgctcgtgttgctcgatgaactt
ggtcgcggcacgtcgacgtacgacggcacggctatcgcgtccggcgtgtgcgccgagctg
gcggcgcgcggctgccgtgtcgtattctctacgcactaccactcgctcgtacaccacttc
gctacacaccccggagtcatattaggacatatggcgtgcatggtggagacagacgaatcg
acgccggatagcgaggaccacattcctgaggagacgatcaccttcttgtataagttgacg
ccgggagcgtgtccgaagtcctacggcttcaacgcggcgcggctggccggagtgtccaag
cacatcactcgcagagcgcaccagatatccaagaggttggagaaagaagccacttgcgtc
cgcgccttcagggacattttgaaaatggaaaccaaaggcaaggatatccgtgagttgctg
gcagctttgtgcatttaa
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