Panicum hallii (Hall's panicgrass): 112881937
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Entry
112881937 CDS
T07366
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112881937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112881937
Enzymes [BR:
phai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
112881937
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
112881937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ATP_bind_1
AAA_22
ABC_tran
CbiA
SRPRB
AAA_24
AAA_10
MMR_HSR1
AAA_29
GTP_EFTU
PduV-EutP
Motif
Other DBs
NCBI-GeneID:
112881937
NCBI-ProteinID:
XP_025802659
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All DBs
Position
1:6110133..6114598
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AA seq
437 aa
AA seq
DB search
MAATATAGAAAAPPPRQCKLDPKSELRVEVPPDAPLRVRLVAGTAEIFGTELPPEGWVPI
PPRSKIAIFTWHGATLELDGVTESEYPSEETPMVVYVNTHAILDARRARARAAAAQGGDL
EASQGPRVIVVGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATPIE
KPIDIVDGIPLEMPLVYFYGHPTPSINPDVYKVLMKELAKTLERQFSGNAESRAAGMVIN
TMGWVEGLGYELLLNAIETFKANVVLVLGQEKLWKMLKDAVQSKPNIDVVKLQKSEGVVL
RNSKYRQKTRSFRIKEYFYGIANDLAPHSNIVNFSDISVYRIGGGHQAPRSALPIGAEPV
ADPTRLVAVNISTDMIHTVLAISYAKEPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPG
DLPSRLLIASSLTWYEA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacggcaaccgcgggggccgccgctgcaccgccgccgcggcagtgcaagctg
gacccgaagagcgagctgcgcgtggaggtgccccccgatgcgcccctccgcgtgcgcctc
gtcgccggcacggcggagatcttcggcaccgagctgccccccgagggctgggtccctatc
cctccccgctccaagatcgccattttcacttggcacggcgcgacgctggagctggacggg
gtcaccgagagcgagtatccttccgaggagacgccaatggtggtttacgtcaacacacac
gctattcttgacgcgcggagggcaagggcaagggctgctgcagcgcaggggggtgatttg
gaggcctcgcagggacctagagtgattgttgtgggaccgacagattctggaaaaagtacc
ctctgcaaaatgctccttagctgggctgccaaactgggctggaagcctacatatgtggat
ttagatatcggccaggggtctataacgatccctggatgtatttctgctaccccaattgag
aaacctatcgatatagttgatgggattcccttggagatgccactggtttacttctatggt
cacccaactccaagtatcaatccggatgtttataaagttcttatgaaggagctagctaaa
acattggagagacagttctctggcaatgctgaatccagggcagcaggaatggttatcaat
accatggggtgggttgaaggccttgggtacgagttacttctaaatgcaattgaaactttc
aaggccaatgtagtgctggtactgggacaggagaaactctggaagatgttaaaggatgca
gttcaaagcaagcccaacattgatgttgtaaaacttcagaaatcagagggtgttgtcctc
agaaattcaaaatatcgccaaaagactagaagcttccgaatcaaggaatacttttatggg
attgcaaatgatctggcgccacattcaaacattgtcaatttcagtgatatctcagtgtac
agaattggtggtggtcatcaagctcctcgctccgcattgcctatcggtgcagagcctgtg
gcagatcctactcggcttgttgctgtcaacatcagcacggatatgatccatacagtgctt
gctatttcttatgctaaggaacctgatgaaataatttctagcaatgttgccggtttcatt
catgtcacagatgtggacatccagaggaagaagctgacgtacattgcaccttgcccgggg
gacttgccgagtaggctgctgatcgcgagctctctgacatggtatgaagcctga
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