Panicum hallii (Hall's panicgrass): 112899642
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Entry
112899642 CDS
T07366
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112899642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112899642
Enzymes [BR:
phai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112899642
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
112899642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
112899642
NCBI-ProteinID:
XP_025823983
LinkDB
All DBs
Position
7:38357552..38370301
Genome browser
AA seq
1398 aa
AA seq
DB search
MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWSSRIYGNDMKPVPN
GLLDMRMGLPSKRDKDSVCSTCYGPFSECPGHFGYLKLALPVFNVGFFNCILDVLKCICK
GCSRVLLSEKDRREFLKKMRNPRADALQKSATMKKVRDKCKTTCCPRCEYRNGVVKKGRA
GLIVIHDCSKILDGHAEELKNALQHKKEKVSTSSVRMLDPATVLSLFRRMTDEDCELLNL
GDRPEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGGLF
NKCFDCWQQLQLQVVEYVNSDAPCLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTV
ISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDGTR
LSLKYGDRRIAARDLKCGYIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFN
ESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSS
FLVTRKDTFYDRSSFTLMCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNARTK
VFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLG
NGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKK
IDEGYKQCHDLISLFAKGALALHPGCNAAETLEHRITGVLNEIRTAAGNVCMDTLHWRNS
PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFVAN
SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG
IIQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPQRGPDTLSPADIRQMLEDKLTQ
HGTSSDGGCSQEFEKGLREFFEKRINLLECTRRALHLDVGHVGKKDSCIEEFVAANISGI
SAKQLQVFLDTCFSRYHSKTIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG
VPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASDIKIILKPSQA
NLVVKLDMQLIEALHMGISADTVQLSILKHPKIKLKPEHVRVIDRAKLKIYPAGTDKSKL
QLELHNLKSMLPKVIVKGIPTVERVVIDEIKKKDNTVEKYNLLVEGTNLLAVMGTPGVDA
RNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLGI
TRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKVR
QRLDRLPEFKYQPDPILS
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccggaggagaagttgcgctgcacgaaggagcccttcatcgaggacgtcggc
gcccgcaggataaagagcatccggttcagtgtgctctcgggcagcgagattcgcaagtcc
gctgaggtgcaggtctggagcagccggatctatggtaatgacatgaagccggtccccaat
ggtttgctcgacatgcgaatgggactccctagcaaacgagacaaggattctgtatgcagc
acctgctatggtccattttctgaatgtcctggtcatttcggttacctgaagctcgcgctt
ccagtttttaatgttggcttttttaactgtatcctggacgtgttgaagtgtatctgcaag
ggctgtagcagggttcttctttcggaaaaagaccgcagagagtttctgaagaagatgaga
aatcccagagctgatgcgctacagaaaagtgctaccatgaaaaaagttagggacaaatgc
aaaacaacctgctgcccccggtgtgaatacagaaatggtgtagttaaaaaaggcagagca
ggcctgatagtgattcatgattgcagcaaaattttggatggacatgcagaagaactgaag
aatgcattacaacacaagaaagaaaaagtctccaccagttcagttcgcatgttagaccct
gcaactgttctctctctattcagaagaatgactgacgaggattgtgaattgctaaacctt
ggtgataggccagaaaaacttattgtgacggagattgcagtgccacctgtacctatacgg
ccttctgttgttgttggcaatactagaacaagcaatgaagatagcattactgctatattg
aagagcattgttaatacaaattccatacttaaggagacccttcaaactgggggtctgttc
aataagtgctttgattgctggcaacaacttcaacttcaagttgttgaatacgtaaatagc
gatgccccctgtcttcctgagtcgcaacatcgtggtcttgttcaacgactcaaagggaag
acaggtcgatttcgtggtaacttatctggaaaacgtactgagtacactggaaggactgtc
atatctcctgatccaaatttgagaataacagaggtggctattcctgtgttgatggctcga
gtcttgacttatcctgaaagggtttcaaactataaccttgagaagctgcgtcagtgtata
cgaaacggaccatataaacatccaggggctaattttattataacccctgatggcacaagg
ctgagcttaaagtatggtgatagaaggattgctgcgcgggatttaaagtgtggctatata
gttgaaaggcatttagaagatggtgatgttgtcctattcaacagacagccgagtttgcat
agaatgtcgattatgtctcacagggcaaggataatgccatggagaacactgagatttaat
gagtctgtttgcaacccgtataatgctgattttgatggcgatgaaatgaatttgcatgtc
cctcagacagaggaagctcgcactgaagcacttatgctcatgggggttcagaataattta
tgtactcctaagaatggggagatactggttgcttccacacaagatttcttgacctcatct
tttctggttacaagaaaagatactttctatgatagatcttcttttacacttatgtgctca
taccttggtgatgcaatggagaacattgatttgccaacaccagccttgattaaacctatc
gagctttggactggtaaacagttattcagtgtgttagttcgacctaatgcacgtacaaag
gtgtttctgaatcttgccgttaaagaaaaaatttactcgaaaaagaaggagaaaaaagag
ggggaagaggaggaaaaggaaacaatgtgtggaagggaaacaatgtgtcccaatgatggt
tatgtctacttccgaaatagtgaactgttgtctggacaagttgggaaggccacgttaggt
aatgggaataaggatggcatttactctgttcttctaagagattacaattcgcacgctgca
gcaagctgtatgaatcgtttggcaaaatttagtgcaagatttattgggaaccatggtttt
tccattggtgtggatgatgtccaaccaggagaacatctaaatcggcaaaagaaaaagaaa
atagatgaggggtataaacaatgccatgatcttatttctttgtttgccaaaggtgcactc
gcattgcatcctggttgcaacgcagctgaaacattggagcataggataaccggcgtgttg
aatgaaatcagaacggctgctggaaacgtgtgcatggatacacttcactggaggaacagc
ccattgattatgtctcagtgtggatctaaaggttctccaatcaatatcagtcagatggtt
gcatgtgttggccagcaatcagttggagggcgtcgtgccccagatggttttatagataga
actcttcctcactttcctataaattcgaagacccctgcggctaaaggttttgttgctaat
tcgttctatactggtttgactgctactgagtttttcttccacacaatgggtggccgagaa
ggtcttgttgacacagcagtcaaaacagcagaaactggatatatgtcccgcagattgatg
aagggtttagaagatctctctgttttctatgatcagacagtccgtaatgctagtggtggt
ataattcagtttttgtatggagatgatggcatggatcctgcaaagatggaaggaaaagat
ggcacacccttaaatttggaccaattgtttatgaaagtcacggcaacatgtcctcaaagg
ggaccagatacattatctccagccgatatccgacagatgttagaggataagctcacacaa
catggcacctcatctgatggtggttgtagccaagagttcgagaaaggcttgagagaattt
tttgagaaacgtataaacttactggaatgcacaagaagggcacttcatttagatgtgggc
catgtaggaaagaaagattcttgcattgaagaattcgttgctgctaatatatctggtata
tctgcaaaacaactacaggttttcttggatacttgtttttctcgttatcactcaaagaca
attgaagcaggagcatctattggagcaattggagctcagagtattggagagccagggact
cagatgacactgaaaacatttcattttgcaggagtagctagcatgaatgttacgcttggt
gttcctcgcatcaaggaaattatcaatgctgctaaaaagataagcactcctattatcaca
actgagcttctgtctaggaaagatgtgctgtctgcacgcattgtgaaaggagctatggag
aaagcagtgctgggcgaggtagcatcagacataaagattatcttgaaaccaagtcaggca
aacctggtggtcaaacttgatatgcaacttatagaagctctgcacatgggaatatctgct
gacactgtgcagctgtcaattttgaaacatccaaagatcaagttaaaacctgagcatgtc
cgtgtcatcgatagagccaaattgaaaatatatccagctggaacggataagtccaaactt
cagcttgaactgcataacctcaaatccatgcttccaaaagtgattgtgaagggcattcca
actgttgaaagagttgttatcgacgaaataaaaaaaaaggacaacactgtagaaaaatac
aacttgttggttgaaggaacaaacctcctggcagtcatgggtaccccaggagttgatgcg
aggaatacaaaaagtaatcatatcatggaaatgaacagcacacttggaattgaagctgct
aggagatctattattgatgaaattcagtacacaatgaaaagtcatggcatgaatattgat
gtgagacatatgatgcttctggcagatttgatgacatacaagggtgaagttcttggcatt
actagatatggcattgcaaagatgaagagcagtgtgctgatgcttgcttcgtttgagaaa
acctcggaacatctattcaatgcctcatacagtggtcgtgaggacgagatagagggagtc
agcgaatgcattatcatgggcattcccatgcaactcggtaccggtattctcaaagtcagg
caaaggctcgaccgtctccctgaattcaagtaccagccggacccgatactgtcgtga
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