Pseudomonas hydrolytica: NLY38_16540
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Entry
NLY38_16540 CDS
T08519
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
phf
Pseudomonas hydrolytica
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phf03009
]
NLY38_16540 (rimO)
Enzymes [BR:
phf01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
NLY38_16540 (rimO)
Ribosome biogenesis [BR:
phf03009
]
Prokaryotic type
ribosomal protein modification factors
NLY38_16540 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
CLP1_P
RNase_II_C_S1
TRAM
Motif
Other DBs
NCBI-ProteinID:
UTH30039
LinkDB
All DBs
Position
3546566..3547888
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AA seq
440 aa
AA seq
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MSTATPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYQDADVVVVNTCGFIDSAKAE
SLDAIGEAIAENGKVIVTGCMGVAEDSIRDVHPSVLAVTGPQQYEQVVSAVHEVVPPKTE
HNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERL
VKAGVKELLVISQDTSAYGVDMKYKLDFWNGQPVKTRMLELCEALSSMGVWVRLHYVYPY
PNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKKWREICPELTIR
STFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANDLGLEPVPDDVKQERW
ERFMAHQQAISSARLQAKIGLEMDVLVDEVDGEGAVARSWADAPEIDGSVFIDSTDVKPG
DKVRVRIVDADEYDMWGELV
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgccacaccgaaagtcggcttcgtcagccttggttgcccaaaagcgacggtc
gactccgaacgcatcctgacccagctgcgcatggaaggttacgaaatcgtaccgacctac
caggatgccgacgtggtggtggtcaatacctgcggcttcatcgacagcgccaaggccgag
tcgctggacgccatcggcgaggccatcgccgagaacggcaaggtgatcgtcaccggctgc
atgggtgtggccgaagacagcatccgcgacgtgcaccccagcgtgctggccgtcaccggc
ccgcagcagtatgagcaggtggtcagcgcggtgcatgaagtggtcccgccgaagaccgag
cacaacccgctgatcgacctggtgccgccgcagggcatcaagctcacgccgcgtcactac
gcctatctgaagatttccgagggctgcaaccacagctgcagcttctgcatcattccgtcg
atgcgcggcaagctggtcagccgcccggtgggcgatgtgctcagcgaggccgagcgcctg
gtcaaggccggcgtcaaggagctgctggtgatcagccaggacaccagcgcctacggcgtc
gacatgaagtacaagctggacttctggaacggccagccggtaaagacgcgcatgctcgag
ctgtgcgaggcgctgtcgtcaatgggcgtgtgggtgcgcctgcactacgtctacccctac
cccaacgtcgacgacgtgatcccgctgatggccgccggcaagctgctgccgtacctggat
atccccttccagcacgccagcccgaaagtactcaagtcgatgaagcgtccggccttcgaa
gacaagaccctggcgcgcatcaagaagtggcgcgagatctgcccggagctgaccatccgt
tccaccttcatcgtgggcttccccggcgagaccgaagaagacttccagtacctgctggac
tggctgaccgaggcgcagctcgaccgcgtcggctgcttccagtattcgccggttgaaggc
gcgccggccaacgatctgggcctggagccggtaccggatgacgtcaagcaggaacgctgg
gagcgtttcatggcgcatcagcaggcgatcagctcggcacgcctgcaggccaagatcggc
ctggaaatggatgtgctggtcgatgaagtggacggcgaaggtgcggtggctcgctcctgg
gccgacgcccctgagatcgacggcagcgtgttcatcgactccaccgacgtcaagccgggc
gacaaggtgcgcgtgcgcatcgtcgacgccgatgaatacgacatgtggggcgagctggtg
taa
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