Pangasianodon hypophthalmus (striped catfish): 113527336
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Entry
113527336 CDS
T05759
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03020
RNA polymerase
phyp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113527336
09124 Replication and repair
03420 Nucleotide excision repair
113527336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113527336
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113527336
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113527336
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113527336
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113527336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
113527336
NCBI-ProteinID:
XP_026770825
LinkDB
All DBs
Position
Unknown
AA seq
1972 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTDGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFIAKIMKVLRCVCFFCSKLLVDAN
NPKIKDILAKSKGQPRKRLMHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKY
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSHKAFEKKFKFDYTNERALRRTLQEDVLKEVMTNAHVQSALEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLLNIHLRSTLCSRRMTEEFRLSSEAFEWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKRTII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTXXXXXXXXXXXXXX
XXXXXXXXSAPSPMSSMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASG
FSPGYSPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYS
PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPS
YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT
SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTY
SPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5919 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagccctgatgagcttaaacggatgtccgtcacagatgggggcatcaag
taccccgagaccaccgagggaggacgtcccaaactgggcggcctcatggaccctcggcag
ggggtcatcgagaggtcggggagatgccagacgtgtgcaggtaacatgacagaatgtccg
ggtcacttcggtcacatcgagctggccaagcccgtctttcacgtcggcttcatcgcgaag
atcatgaaagtcctccgctgtgtgtgtttcttctgctccaagctgctggttgatgcgaac
aacccaaaaatcaaagacatcctggccaagtcgaaaggtcagccgcgaaagcgcctgatg
cacgtctacgacctgtgtaagggtaaaaacatctgcgagggcggcgaggagatggacaac
aagttcggagtggagcagcaggagaacgacgaggacctcactaaagaaaagggtcacggc
ggatgtgggcggtaccagcctcgtatccggcgctcgggcctggagctgtacgccgagtgg
aagcacgtaaacgaggactctcaggagaagaagattctcctcagccccgagcgcgtgcac
gagatcttcaaacgcatctcagacgaggaggatctcatcctggggatggatcccaagtac
gcgcggccggagtggatgatcgtcaccgtgctgccggttccgcccctcgccgtcagaccg
gctgtggtcatgcagggctcggccaggaaccaggatgatttgacgcacaagttagccgac
attgtgaaaatcaataaccagctgcgacggaacgagcagagcggagctgcagcgcacgtt
atagcagaagacgtcaagctcctgcagttccacgtggccaccatggtggacaacgagctg
cccggtctgcctcgagcgatgcagaaatccggccgtccgctcaaatccatcaaacagagg
ctgaaggggaaagaaggccgtgtgcgaggaaacctgatggggaagcgtgtggacttctct
gcccgaaccgtcatcacgcccgaccccaacttacagatcgaccaggtgggcgtgcctcgc
tccatcgccgctaacatgaccttccccgagatcgtcacgccgttcaacatcgacagactc
caggagctcgtgaggagaggaaacagtcagtatcccggagccaaatacatcatccgggat
aacggagaccgaattgaccttcggttccacccgaaaccgagtgaccttcaccttcagatc
ggctataaggtggagcgacacatgtgcgacggtgacatcgtcatctttaacagacagccc
accttgcacaaaatgtctatgatgggtcacagggttcgaatcctgccgtggtcgacgttt
cgactcaacctcagtgtaacgactccttacaatgccgacttcgacggagacgagatgaac
ctgcacctgccccagtcactcgagacgcgcgccgagattcaggagctggccatggtgccg
cgtatgatcgtcacgccgcagtccaacagacccgtcatgggtatcgtgcaggacacgctc
accgccgtgcgcaagttcaccaagcgagacgtcttcttagagaggggtgaagtgatgaat
ctgctgatgttcctgtcctcctgggacggcaaagtgccgcagcctgctattttaaagcca
cgcccactgtggaccggcaaacagatcttcagcttgatcattccaggtcacatcaacgtg
atccgtacacacagcacgcatccggacgacgaggacagcggcccgtataagcacatctct
cctggagacacaaaggtgatcgtggagaacggagagctgatcatggggatcctgtgtaag
aagtctctcggtacgtccgccggttctctcgtccacatctcctacctggagatgggtcat
gacatcacccgcctcttctactccaacattcagactgtcgtcaacaactggctgctcatc
gaaggtcactctattggtattggtgactctatcgctgatgcgaagacgtatcttgacatt
cagaacaccatcaagaaggccaaacaagatgtgatagaggtcatcgagaaagctcacaac
aacgaactggagcccactccaggtaacactctgaggcagacctttgaaaatcaggtcaac
cgtatcctgaacgacgctcgagacaagacgggatcttctgctcagaagtcgctgtccgag
tacaataacttcaaatccatggtggtggccggatccaagggctccaaaattaacatctcg
caggttattgctgtggtgggtcagcagaacgttgagggtaaacgaatccctttcggcttc
aagcaccgcactcttcctcacttcatcaaggacgactacggtcccgagagtagggggttc
gtggagaactcgtacctcgccggtctgacacccacggagttcttcttccacgccatggga
ggcagagagggtctgatcgatacggctgtgaaaacggccgagacgggttatatccagcgt
cgtctgatcaagtctatggagtcggttatggtgaaatacgacgccactgtgaggaactcc
attaaccaggtggtgcagctgagatacggagaggacggtctggctggagaggctgtcgag
ttccaaaacatggccacgcttaaaccatcccacaaagcttttgagaagaagttcaagttt
gactacactaacgagcgagctctccggcgcacgctgcaggaggacgtgctgaaggaagtg
atgaccaacgcacacgtgcagagcgccctggagagggagtttgagaaaatgaaggaggac
cgagagatcttgagagccattttccccaccggagacagcaaggtggtgctgccgtgcaat
ctggcccgaatgatctggaatgcgcaaaagattttccgcatcaacccgcgaactccaaca
gatctcaaccctttaagagtggtggagggtgtgcaagagctgagtaagaagctggtgatc
gtgaacggtgacgatccgttaagcaagcaggcccagcagaacgcgacgctgcttcttaac
atccatctgcgctccaccctctgctccagacgcatgaccgaagagtttcgtctcagctcc
gaggccttcgagtggctcctgggagagattgagaccaagttcaaccagtcaattgttcac
ccgggtgagatggtgggtgctctggccgctcagtctctgggtgagcctgccactcagatg
accctgaacaccttccactacgccggcgtgtcggctaagaacgtcaccctgggtgtgcct
cgactcaaagagctgatcaacatctccaagcgtcccaagactccgtccctgaccgtgttc
ctgctgggccaggcggcccgcgacgcagagcgcgccaaagacatcctgtgtcgcctggag
cacacgacgctgcgtaaggtcacggccaacacggccatctactacgaccccaacccccag
agcacggtggtggccgaggatcaggagtgggtgaacgtttactacgagatgcccgacttt
gacgtgacccgcatctctccctggctgctgcgcatcgagctggaccgcaaacacatgact
gaccgaaagctctccatggagcagatcgctgagaagattaacgcaggttttggtgacgat
ctaaactgcatcttcaatgacgataacgctgagaagctggtgctgcgtatccgaatcatg
aacagcgatgagaacaagttccaggaggatgaagaggtggtggataagatggacgacgac
gtgtttctgcggtgcatcgagtccaacatgctgacggacatgaccctacagggcatcgaa
cagatcagcaaggtgtacatgcatcttcctcaaaccgagaacaagaaaaggaccataatc
acggaggagggagagtttaaagcgctacaggaatggattctcgagacggacggcgtcagt
ctaatgcgagtcctcagcgagaaggacgtcgaccccgtcaggaccacctccaacgacatc
gtggagatcttcactgtgctcggtatcgaggcagtgcgtaaggctctggagagagagttg
taccacgtcatctccttcgacggttcctacgtgaactaccgccatctcgccctcctgtgc
gacaccatgacctgcagaggtcacctgatggccatcacccgtcacggcatcaacagacag
gacaccggcccgctcatgaagtgctcttttgaagagacggtggacgtcttgatggaagcg
tcgtcccatggagaatgcgatcccatgaagggcgtgtctgaaaacatcatgctcggacag
ctggctcctgcaggcaccggctgcttcgacctgctgctggatgctgagaaatgcaaatac
ggcatggagattcccaccaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnctccgcccccagccctatgagcagcatgtctccagcc
atgacaccctggaacacgggggccaccccggcttacggtgcatggtctcccagcgtggga
agtggaatgactccaggagctgcaggattttcacccagtgctgcctccgatgccagcggc
ttctctccgggttactcgcccgcgtggtctcctacacccggctctcctggatctcctggt
ccagccagtccttacattccctctccaggtggagccatgtctccaaactattcccccaca
tctccggcgtacgagccgcgatcccctggaggctacaccccgcagagccccggctactcc
cccacatccccgtcttactctcccacctctccttcctactctcccaccagccccaactac
agcccaacatctccatcttattccccaacctctccatcctactctccaacatctccatct
tattccccaacctccccgagctattcgcccacatcgccctcttactctccaacatctcca
tcttattcgcccacctctccatcttactctccgacatctccgtcgtattctccgacttcg
ccctcttattcaccgacgtctcccagctacagcccgacgtccccgtcgtattcgcccacc
tctccatcgtactcaccaacttccccctcgtactctccgacctctccttcgtattccccg
acttcgccttcatattccccaacgtctcccagttacagcccgacctcgcccaattacacg
cccacttcgcccagctactcgcccacctctccgtcttacagcccaacctcgccttcgtac
tcgcctacgtctccgaattacacgcccaccagcccgaactattctcccacatccccgtct
tactcccccacctctccgtcttactccccttccagccctcggtacacgcctcaatctcct
acatacaccccgagctcgccctcttacagcccgagctcgccgtcttactcccccacgtct
ccgaaatacacccccacctctccatcgtacagccccagctctccggaatacaccccgact
tcacccaaatactctcccacttcgcccaagtactcgcccacttctcccaaatacagcccg
acgtctccgacttactcgcccactacgcccaaatacagccctacgtctccaacgtactct
ccaacatctcctacctacaccccgaccagccccaagtactcgcccacttcgcctacatac
tccccgacgtctccaaaatactccccaacttcgccgacgtactcgcctactagtcccaaa
ggctcgacttacagcccgacttcgcccgggtacagtccaacgtctccgacctacagtcca
gccatcagccccgacgacagcgacgaggaaaacaactga
DBGET
integrated database retrieval system
