KEGG   Pangasianodon hypophthalmus (striped catfish): 113533273
Entry
113533273         CDS       T05759                                 
Symbol
polr2e
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03020  RNA polymerase
phyp03420  Nucleotide excision repair
phyp04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    113533273 (polr2e)
  09124 Replication and repair
   03420 Nucleotide excision repair
    113533273 (polr2e)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    113533273 (polr2e)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phyp03021]
    113533273 (polr2e)
   03400 DNA repair and recombination proteins [BR:phyp03400]
    113533273 (polr2e)
Transcription machinery [BR:phyp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     113533273 (polr2e)
  RNA polymerase III system
   RNA polymerase III
     113533273 (polr2e)
  RNA polymerase I system
   RNA polymerase I
     113533273 (polr2e)
DNA repair and recombination proteins [BR:phyp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      113533273 (polr2e)
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C NYD-SP12_N
Other DBs
NCBI-GeneID: 113533273
NCBI-ProteinID: XP_026781108
LinkDB
Position
Unknown
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgatgaagaggagacttaccgcctgtggaaaatccggaagacgataatgcagctc
tgccacgatcgaggatacttggtgacgcaggatgagttggatcagacgctggatgagttt
aaaagtcagtttggggacaagccgagcgagggccgtcctcggaggacagatctcacggtg
ctcgtggctcacaacgacgatcccactgaccagatgtttgtcttcttcccagaggagccc
aaggtgggaattaaaaccatcaaaatgtactgccagcgcatgcaggaggagaacatcacc
cgcgccattattgtggtccagatgggcatgacaccttctgctaaacagtcgctggtggac
atggcaccgaagtacatcctggagcagtttctccagcaagagctgctcatcaacatcaca
gagcacgagctggtccctgagcacattgtgatgacgaaggaagaagtgacagagctgcta
gcgagatataagctgaaggagagccagttacccaggattcaagccggagacccggtggct
cgatatttcgggctgaaaagaggccaggtggtgaagatcatccggccgagtgagactgca
ggtcgttatataacctacagacttgtacagtga

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