Pangasianodon hypophthalmus (striped catfish): 113534118
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Entry
113534118 CDS
T05759
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phyp03016
]
113534118 (cdkal1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
113534118 (cdkal1)
Transfer RNA biogenesis [BR:
phyp03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
113534118 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
113534118
NCBI-ProteinID:
XP_026782530
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MPSACDSLIDDIEDIVSSSEQAPLQRSSTRQSVVPRVRKRKDLTANEELQADSVIPGTQK
VWLRTWGCSHNSSDGEYMAGQLAASGYKMTDDPSEADVWLLNSCTVKNPAEDHFRNNIKK
AQEQNKKVVVAGCVPQAQPRMDYLKGLSIIGVRIKCFLLCLSSNQRLCYSNEIWFCAVLQ
SGEDTAISNLIVSERGGVGLLPKHCVCVCVCVCVCGEGHSVRLLGPKKDNGKRLGGARLD
LPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQSFQEGVCEIWL
TSEDTGAYGRDIGTDLPTLLWELVKEIPEGCMLRLGMTNPPYILEHLEEMAKILNHPRVY
AFLHVPVQSASDSVLMDMKREYCCDDFTHVVDFLKDRVPGITIATDIICGFPGETDEDFQ
QTMELVRKYRFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELSALFHSYNPYDHKVG
EKQSVLVTEESFDAQYYVAHNKFYEQVLVPKKPEFKGKMIEVDIFEAGKHFLRGRPVEDS
TVITPSINQPLEKGEISGLSQKQKASSQNGVHAPLTPASIGCSWNLDGQGLKLLSVGLTL
LAVVVVFIFEKLQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgcctgcgactctctcattgacgatatcgaggacattgtgtcctccagcgag
caggctcctctccagcgctcgtccaccagacagtccgtcgttccccgcgtgagaaaacgg
aaagatctcacagctaatgaggagctgcaggcggacagcgtgatcccgggcacgcagaaa
gtgtggttgaggacgtggggctgctcacacaacagctcagatggagaatacatggccgga
caactggctgcgagtggctacaagatgaccgacgacccgtctgaggcagatgtttggctg
ctgaacagctgcacggtaaaaaacccagcggaagatcacttcaggaacaacatcaagaag
gctcaggagcagaataagaaggtggtggtagcaggatgtgttcctcaggctcagcccagg
atggattacctcaagggcctgagcattataggggtaagaatcaaatgttttcttctgtgt
ttatcatctaatcagagactttgttactccaatgaaatctggttttgtgcggttcttcag
tcaggcgaggacacggcgatcagcaatctgatagtgtctgagcgaggtggtgtcggcctg
cttccaaaacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgaaggtcactcc
gtacgtctgctgggtccgaagaaagataatggcaagcggcttggtggcgctcgattggat
ttgccgaagattaggaagaacccgctgattgaaatcatttccatcaatacaggatgtttg
aatgcttgcacatactgcaaaaccaagcacgcacgaggtgacctggccagttaccccatc
gaagaactggtggaacgagccagacagtccttccaggagggagtgtgtgagatctggctg
acgagcgaggacacgggtgcttatgggagggacattggcacggatctgcccactctgctg
tgggagctggtgaaggagatccctgagggctgcatgcttcgcctgggcatgaccaaccca
ccctacatcctcgaacacctggaggaaatggcaaagatcctgaatcacccgcgagtgtac
gccttcctgcacgtccccgtccaatcagcatccgacagcgtgttgatggacatgaagaga
gagtactgctgtgacgacttcacacatgtcgttgactttctgaaggacagggttccaggc
atcaccatcgccactgacatcatctgcggctttccgggagagacggacgaggacttccag
cagacaatggagctcgtgagaaagtaccggttcccgagcctctttatcaaccagttctac
ccacgacctggaactcccgcggccaagatggagcaggtcccggctcatgtgaaaaaacaa
agaacgaaggagctgtctgcactgttccactcatataacccttacgaccataaggtcgga
gagaagcagagtgtgttagtcactgaggagtcgttcgacgctcagtactacgtcgcccac
aacaaattctacgaacaggttctggttcccaaaaaaccggagtttaaaggaaagatgatc
gaggtggacatcttcgaggcagggaagcacttcctgcgaggtcgtccggtggaggactcc
acggtcatcactccatccatcaaccagccactggagaagggagaaatatccggcctcagc
cagaaacagaaagcttcgagtcagaatggcgtccatgcccccctgacgccggcgtcaatt
ggctgctcatggaacctggatggtcaaggactaaagctgctctctgtaggattgactctg
ctggctgttgtagtggttttcatctttgagaaacttcagtga
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