Pangasianodon hypophthalmus (striped catfish): 113542643
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Entry
113542643 CDS
T05759
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X1
KO
K06454
T-cell surface glycoprotein CD4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03250
Viral life cycle - HIV-1
phyp03260
Virion - Human immunodeficiency virus
phyp04060
Cytokine-cytokine receptor interaction
phyp04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113542643
03260 Virion - Human immunodeficiency virus
113542643
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
113542643
04514 Cell adhesion molecules
113542643
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
phyp04090
]
113542643
CD molecules [BR:
phyp04090
]
Proteins
113542643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
V-set
I-set
Ig_2
ig
Sp38
TM_ErbB1
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
113542643
NCBI-ProteinID:
XP_026796091
LinkDB
All DBs
Position
Unknown
AA seq
487 aa
AA seq
DB search
MGFLLGLLLLLAPSYSAAEEPRVVFAQIGNSVTLPRTQWGTKDKIHVNWYFTNDLLITRN
PTSSSPKIEKWQGRLSLTSDWSLIISPVLESDFGIFRCEQHELVSSTTNRYKLYRVTMPT
PPPLLAQSVSLDLSCEIEREGFERVHPTVRWLGPHKELHSGTFSGNKHTLSVKGVSSSHS
GKWTCEVTCKTCSTLNAMTDVIIVDLNPSPPDPIYTYDTSSNFPIPCSFPSSITWSTLNA
TGVTGGNWSFTSLNSPASSTPLLELHLNSSPVWKAPSGTVSLFKETALKNQVLDVKIPKV
SINDRGTYTCSVKFKSRTLTRKVVVEVLDVIASPEKDIYEGNTVNLSCTLGHPMASDLEV
NWIPPQGSSLPNLSPPHPVELSIPGVKVKHSGRWTCQLKKNTTVLTSATISLKIERAPVL
WLVLSIVGGILGIIVLAVIPVIIIRRRRQVMRYRRRKKKYCCCKNNYAVLPETIIQFHPQ
PKGFYKN
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcttattggggttattgcttctgttggctccatcttactcagctgcagaagaa
ccacgagtagttttcgcacagataggaaactctgttactcttcccaggactcaatgggga
acaaaagacaaaattcatgtcaactggtactttacgaatgatttattgattactaggaac
cctacatcatcctctccaaaaatagaaaagtggcagggacgactctctcttacatcagac
tggtctcttatcatttcacctgttcttgagtctgactttggaatcttcagatgtgaacag
catgaactcgtgtctagtactacaaacagatacaaactttatcgtgtaacgatgcccaca
ccgccaccactgctggctcagtctgtcagtctcgatctgtcctgtgaaatcgaaagggaa
ggatttgagcgtgttcaccctactgtaagatggttagggccgcataaggaacttcattcc
ggaacattcagtgggaacaaacacactcttagtgtgaaaggtgtctccagctctcacagt
ggaaagtggacctgtgaagtgacatgtaaaacttgcagcacattaaatgccatgactgat
gtcatcattgtagatctcaacccctctccaccagatcccatctacacgtatgacacctcc
tctaattttcctatcccgtgttccttcccctcaagtattacctggtccacattgaatgcc
acaggtgtgacaggaggtaattggagtttcacttcacttaactcccctgcatcctcaacc
cctctactcgaattacatctcaattcctcccctgtctggaaggcccccagtggcacagtc
agtctattcaaggagactgcgttgaaaaatcaagtactcgatgtgaagattcccaaggtg
tctataaacgacagggggacatacacctgcagtgtgaagttcaagtcaagaacactcact
aggaaagtagtggtagaggtgctggatgttattgcttcgccagaaaaagatatatatgag
ggtaacacagtgaacttgagttgcacactgggtcatcccatggcctctgacctggaagtg
aattggatacccccccaaggttcatctctgccaaatctcagccctcctcatcccgtagag
ctgtctatccctggagtaaaagtgaagcacagcgggcgatggacatgtcaactcaaaaag
aatacaacagtgcttacatcagctacaatcagtttgaaaattgagagagctccagtgctt
tggcttgttttatctattgttggtggcattctgggcattatcgtgcttgctgtaatacct
gtcatcatcattcgtagacgcagacaggtgatgaggtatagacggcgtaagaagaaatac
tgctgctgtaagaacaactacgctgttttgcctgaaaccatcattcaatttcacccccag
cccaaaggtttctacaagaactga
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