Pangasianodon hypophthalmus (striped catfish): 113542851
Help
Entry
113542851 CDS
T05759
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113542851 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113542851 (clp1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
113542851 (clp1)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113542851 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_16
AAA_22
MMR_HSR1
TniB
CbiA
AAA_18
nSTAND3
Motif
Other DBs
NCBI-GeneID:
113542851
NCBI-ProteinID:
XP_026796446
LinkDB
All DBs
Position
Unknown
AA seq
446 aa
AA seq
DB search
MSTEAPEKAGDEAPSSGGGAGSGGGSRFDLEKETELRFEVEAGERVQLELLSGLAEVFGS
ELNRNKKYTFGPGSKIAVFTWQGCSLSLSGKTEVAYVSKDTPMLLYLNTHAALEQMRRQA
EKDNERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTLVELDVGQSSVSVPGTMSALY
IERPADVEEGFSVQAPLVFHFGSTSPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCI
INTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVE
RSKDCRRETRDDKIREYFYGFRGTTFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQD
DTQLKLVPVSPGRDLTHHVLSVSCVEDDAEGGESRSRGILESPVCGFIVVTAVDTQAQVM
TVLAPAPRPLPRHTLLIMDIRFIDLK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgaggcgcccgagaaagcgggtgatgaagccccgagctccggaggaggcgcg
gggagcggcggaggttcgcggtttgacctggagaaggagaccgagctgcggtttgaggtc
gaggccggagagcgggtacagctcgaactgctgtccggtttggccgaggtgttcggctcc
gaactgaaccggaacaagaagtacacattcgggcctggttcgaagatcgccgtgttcacg
tggcagggatgcagcctatcgctcagcgggaagaccgaggtggcttatgtctccaaagac
acccctatgctcttgtatctgaacacacacgctgcgctggagcagatgagacggcaggct
gagaaagacaacgagagagggccgagggtcatggtggtggggccgaccgacgtggggaaa
tccaccgtgtgtcgtctgctgctgaactacgcagtgaggctgggcaggaggcccacgctc
gtggagctggacgtcggccaaagcagcgtgtctgttccagggacaatgtcagcgctgtac
attgagcgtccagcagatgtcgaggaaggtttctctgtccaggctcctctagtcttccac
tttggctccacatcaccagggaccaatatcaaactgtataacaagctgacgtcctgtctg
gcggaggtgttctcacagcgctgtgaggtgaaccggaaggccagcgtaggaggctgcatc
atcaacacgtgcggctgggtgaagggttcaggataccaggcgctggtccactgcgcttca
gcattccaggtggacgtggtgctggtcctcgatcaggaacgcctctacaacgagctcaaa
cgggatctgccgcactttgtccgcgttgtgctgctacccaagtccggcggtgttgtagaa
cgctccaaagactgcagacgggagacacgcgacgacaagatccgcgaatatttctatggc
ttccgtggcaccacgttctacccgcacgctttcgacgtgcgcttttcggatgtgcgcatc
tacaagatcggggcgccatccattccggactcgtgtctgccgctgggcatgtcgcaggac
gacacgcagttgaagctggttcctgtgagcccggggcgtgacctgacccaccacgtgctg
agcgttagctgcgtggaggacgacgctgagggaggagagagccgcagcagggggatttta
gagagtccggtttgtggcttcatcgtggttacggctgtggacactcaggctcaggtgatg
actgtactcgctccagcacccagaccgctgcctcgacacacactcctcatcatggacatt
cgcttcatagacctcaaatga
DBGET
integrated database retrieval system
