Pangasianodon hypophthalmus (striped catfish): 113542867
Help
Entry
113542867 CDS
T05759
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113542867 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113542867 (polr1a)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113542867 (polr1a)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
113542867 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
113542867
NCBI-ProteinID:
XP_026796476
LinkDB
All DBs
Position
Unknown
AA seq
1695 aa
AA seq
DB search
MLFSKETPWRRLEGMSFGMYSSEEIRKLSVKSVTNPLLLDNVGNPAPNGLYDLSLGPADL
KEVCTTCMQDFNNCPGHFGHVDLHLPVYNPFLFDKLYMLVRGSCLSCHMLTCPRAAIHLL
LNQLKLLDVGAMKEVCELPIVLNQFLEGSPQASGAEIQEALEEFSTPIIKANHSSHGCAP
IKHICEMKGSLITEFWRTHMASRKCPNCNASKSQIRREHNSKLIVTHSGIKEDSRVDKDD
VHVAKRGYLTPSLARDHVTKVWEKEGFFLKHLFSGLAENSPNGFSPDMFFLELLMVPPSR
YRPVSRLGDQMFTNGQTVNMQAVIKDNMIIQKLLALIASEKARTIEGTQTELEEPSETQE
PSQMDQTFLAGIPGVTLTDKLYNIWIRLQSHVNIVFDSDMDKLMTEKFPGIRQLLEKKEG
LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPDVHPGASMVINEDGSRTILSRINPTQREAIAKQLLTPSTGQHRMPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRDCFFPQDQYMELVYRGLTDKRGR
VKLLPPALIKPQKLWTGKQVVSTLLLNVIPENHIPLNLTGKAKIPSKAWVKEPPRSVPGY
HPDSMCDSQVVIRNGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTMGVEDILVKPGANKRRKKIIKESVNCGIKALGAAFNLSAAAAENEGRDLWQ
NAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPRQFPFIKDNFEVIRKSQCLDEVLAKLDPKAAHSHFKAIKKWKAKHEHSSPRNG
AFLLFSQKKLGKIKAQAEGQLGELANGRDNATLQLLENWKNMDESSHVKYLKKTAHCPDP
CLSIYRPDICFGSVSETFESIIESYLSQFNIKQEFHSSSEYVDNERLRHLLHLKWQRALC
EPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSKIKTPMMS
IPVLSNKKALKRVKTLQKKLTRVCLAEVLHKVDVVETLRMEGKRGQKKRIFTVTFHFLPP
ERYQQDKLLQPQQILRFMEDRFFFLLLDAIKKLSAKLASINSVDTRKATTKDADRDAEDS
INRADDGDEEAEEGRVVDDEANEGDADAADAKRKEKQEEEVDYESEEGENSGDEDQEEVT
EQPEEEVASEESSEERHGNSQPSNQENVVGETQESMRVNKVLQLSSSIEAYKYDQEKGLW
CEVTLVLPVSKVHFDLTSLVVAQAQNAVIMETKGITRCLLNEVTTKQGAKELVLNTEGIN
MQEMFKYGDVLNLNRLYSNEIHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLV
ADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSYKFLKQATMLGLYDKLNSPSACLVVGK
LVKGGTGLFDLKQPL
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgcttttttctaaggaaacgccatggaggcggttggaaggcatgtcctttggcatgtac
tcctccgaggagataaggaaactgagtgtcaaaagtgtgactaaccctctgctcctggac
aatgttggtaaccccgctcctaatggactctatgatctatcactgggtccagctgacctt
aaagaagtctgcacaacctgcatgcaggacttcaacaactgcccaggacactttggtcat
gtcgacttgcacttacctgtctacaaccctttcttatttgataaattgtacatgcttgta
cgaggttcctgtctgtcgtgccacatgttgacgtgtcctagggctgccattcacctgctt
ctcaaccaactcaaattattagatgtaggagcgatgaaagaagtctgtgaactcccgatt
gtccttaatcagtttttagaaggtagtccacaagcatcgggggcagaaatccaagaggct
ttggaggaatttagtactcctattataaaagccaaccacagcagccacggctgtgcacct
atcaagcatatttgtgagatgaaaggcagcctcatcactgaattttggagaactcacatg
gcatctagaaaatgccccaactgcaatgctagcaagtcacagatacgtcgagagcacaac
agcaaactaatcgtcactcattcgggcatcaaagaggacagcagagtggacaaagatgat
gttcacgtggctaaacgtggatatctaactccaagcttggccagagatcatgtcaccaaa
gtgtgggaaaaagagggtttcttcctgaagcacttgttctcaggcttggcggagaacagt
cctaatggtttcagcccagatatgttcttcttagaattgctaatggttcctccatccagg
taccggcctgtcagtcggcttggagatcagatgtttactaacggtcagacagtgaacatg
caggcggtgataaaggacaacatgatcattcagaaactgcttgccctcattgcatctgag
aaagccaggacgatagagggtactcagacagagttggaggagcccagtgagacacaagaa
cccagccagatggaccagacatttttagccgggatacctggagtcacccttacagacaaa
ctgtataacatctggatacgcctgcagagtcacgtcaacattgtgtttgacagcgatatg
gacaagctgatgaccgaaaagttccctggaatccgccagctcttggagaagaaggagggt
ctgttcaggaaacatatgatggggaagcgagtggactttgctgctcgctctgtcatctgt
ccagacatgtacatcggaaccaatgagattggaatacccatggtgtttgcgactaagctg
acgtacccacagccggtgacgccgtggaacgtgaaggagctgcggcaggccgtgcttaat
gggcctgatgttcaccccggagcctctatggttatcaatgaggatggttcacgcaccatt
ctcagccgcatcaaccccactcagagagaggctattgctaagcaactgcttacacccagc
acgggccagcaccgcatgcccatgaagatcgttaatcggcacatcaaaaatggagatgtg
ctcctcctgaatcgtcagccgacgctacacagaccatctattcaggctcactgtgcacgc
atcctgcctggagagaaggtgctacggctgcattacgccaattgtaaagcctacaacgct
gactttgatggtgatgagatgaatgcgcacttcccgcagagtgagctgggtcgggctgag
gcatacacacttgtcagcacagaccagcagtacctggtgcccaaggacgggaagcccctg
gctggactaatccaggaccacatggtatcgggcaccagcatgaccatccgtgactgcttc
ttcccgcaagatcagtacatggagctggtctatagagggctcactgataaaagaggcaga
gtcaagctgcttcctcctgctctcatcaaacctcaaaaactttggactggcaaacaggtc
gtgtccaccctcttgttgaatgtcatcccggagaaccacatccctctgaacctgacagga
aaggccaagattcccagtaaggcctgggtgaaggagcctcctcgatccgtgccaggctac
catccagactccatgtgtgactctcaggtggtgattcgtaatggtgagctactagtgggt
gtgctggataaagcacactatgggagctctgcatatggactggtgcactgctgctatgag
ctgtatggaggagagaccagtggcaagcttctaagctgtctggcccgcctttttactgcc
tacctgcagctttatcgtggctttaccatgggtgtggaagacattttggtaaaaccagga
gccaacaagagaagaaagaagatcatcaaagaatcagtcaattgtggcatcaaggcactt
ggggcagcctttaacctgtctgctgctgctgcagaaaatgaaggccgagatctctggcaa
aatgcccatctgaacatagaccagcgagacttcaacatggtagacctcaaattcaaagaa
gaggtcaatcaagtcaacaacaacatcaacaaggtgtgcatgccgttgggtctgcaccgt
tcatttcctgagaacaaccttcagctgatggtgcagtctggagctaaaggttccactgtc
aatacgatgcagatctcatgtctgctgggtcagattgagctagagggccgtcgtcctccc
ctgatgccttctgggaaatccctgccttgcttccagccttatgagccgcaacctcgctct
ggtggctttgtgactgggaggttcctgactgggataaaacctccagagttttttttccac
tgtatggctgggcgtgaaggcctggtggacacggctgttaaaacgagtcgttccggctat
ctgcaaagatgtgtgataaagcaccttgagggactggtggttcagtatgacctgacggtg
agggacagtgacggcagcgtggtgcagttcctctatggagaggacggcctggacattccc
aaaactcaattcctgcagcctcgtcagttccctttcatcaaagacaactttgaggttatc
agaaaatcacagtgcttggatgaagtgctggctaaactggacccaaaggcggctcatagt
cactttaaggccattaagaagtggaaggctaagcatgagcattcatctcccagaaatggc
gcattcctgctcttctctcagaagaaactgggcaagattaaggctcaggctgaaggccag
ttgggagagttagccaatgggagagacaatgccactctccaattgctggagaattggaaa
aatatggatgaatccagccatgtcaagtatctgaagaagacagcccattgcccagatcca
tgtctgtctatttaccggcctgacatctgtttcggttctgtgtctgagacgtttgaatcc
atcatcgagtcctacctcagtcagttcaatatcaagcaggaatttcactcttcgtctgaa
tatgttgacaatgagagattaaggcatctgttgcatctgaagtggcagagagcgttgtgt
gagccgggagaggctgtgggactgctggctgctcagagtatcggtgaaccctccactcag
atgactctcaacacctttcactttgcgggcagaggagagatgaatgtcactctgggtatt
cccaggttgcgtgaaattcttatgattgctagctccaaaatcaagacccccatgatgagc
attcctgttttaagcaacaagaaagctttaaaacgagtgaagaccctgcagaagaagctc
acacgtgtgtgtctagcagaggtgttgcacaaagtagatgtggtggagacacttcgaatg
gagggcaaaagaggccagaagaagcgaatcttcactgtcacattccacttcctgcctcca
gagcgttaccaacaggataagttgctgcagccccagcagatcctccgcttcatggaagac
agattcttctttttactgcttgacgccatcaagaaactgagtgccaagctggcctctata
aattcagtggacacacgcaaggccacaacaaaggacgcagatcgggatgcagaggactcc
attaatagagcagatgatggagatgaggaagcagaggagggcagagtggtggacgatgag
gcaaatgaaggggatgcagatgctgctgatgccaagaggaaggagaagcaagaggaggag
gttgactatgagagtgaggagggggaaaacagtggagatgaagaccaagaagaggtgaca
gagcaaccagaggaggaggtggcatcagaggaatcctctgaggagaggcatggcaacagt
caaccctccaaccaagagaatgtggttggagagacacaggaatcaatgagagtcaacaaa
gtgctgcagctcagctccagcattgaggcttacaaatatgaccaggaaaaaggcctgtgg
tgtgaggtcaccctggtgctcccagttagcaaagtgcactttgacctgacctctctggtg
gtagcacaagcgcagaacgcagtaatcatggaaacgaaaggtattacccgttgtttactt
aatgaggtgaccactaagcagggtgccaaggagctggttctgaacactgagggcatcaac
atgcaggagatgttcaagtatggagatgttctcaacctgaatcgcttgtattcaaatgag
atccatgccatggccaacacgtacggtattgaagtggctctgagggtcatcgagaaggag
attaaagacgtgtttgctgtttatggtatcgaagtggacccacggcatctctctctagtg
gctgactacatgtgctttgaaggcgtctacaaaccactcaaccgcttcggcattcagtcc
aacagctccccactgcaacagatgacctttgagaccagctataagtttttgaaacaagcc
actatgttgggcttgtatgataagttgaattcaccctcagcttgcttggttgtgggaaaa
cttgtgaaaggaggaactggactctttgacctcaagcagcccttatag
DBGET
integrated database retrieval system
