Pangasianodon hypophthalmus (striped catfish): 113546918
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Entry
113546918 CDS
T05759
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03020
RNA polymerase
phyp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
113546918 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
113546918 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113546918 (polr2b)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113546918 (polr2b)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
113546918 (polr2b)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
113546918 (polr2b)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
113546918 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
113546918
NCBI-ProteinID:
XP_026802841
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKREECQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRLPYACKLLFQELMSMSIAPRMMTT
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagacgaagatatccagtacgatgaagatgatgatgagatcactcctgac
ctgtggcaggaagcctgctggattgttatcagttcctacttcgatgagaaagggttggtg
cgccagcagctggactcattcgacgagttcattcagatgtccgtccagaggattgtggag
gacgcgccacccatcgacctgcaggccgaggcccagcacacctccggagaggtggaggaa
ccgcctcggtacctgctgaagtttgagcagatctacctgtccaagccaactcactgggaa
agagacggcgctccgtcacccatgatgcccaacgaagcacgactccgaaacctcacgtac
tcggctcctctgtacgtggacatcaccaagaccatcataaaggagggagaggagcagcag
cagacgcagcaccagaaaaccttcatcggcaaaattcccatcatgctccggtccacctac
tgcctgctgagcggcctgacggaccgtgacctgtgtgagctgaacgagtgtcctctcgac
ccgggcggctacttcatcatcaacggctccgagaaggtgctgatcgctcaggagaaaatg
gccacgaatacagtgtacgtgttcgccaagaaggactcgaagtacgcctacaccgccgag
tgcaggtcctgtctggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gccagaggaggacagggagtgaagaagagcgcgatcggtcagaggatcgtctccacattg
ccgtacatcagacaggaagttcccatcatcatcgtgttccgagcgctgggcttcgtgtcc
gacagagacatcctggaacacatcatctacgacttcgatgatcctgagatgatggagatg
gtgaagccgtctctggacgaggcgtttgtgatccaggagcagaacgtggctctgaacttc
atcgggtccagaggggccaaacccggagtcactaaagagaggaggataaaatacgccaag
gaggttctgcagaaggaagtgctgcctcacgtcggcgtgtccgacttctgcgagaccaag
aaggcgtactttttaggttatatggtgcacaggctcctgctggcggctctgggcagaaga
gagctggacgacagagatcattacggcaacaagaggctggatctggccgggccgctcctg
gcgttcctcttccgaggaatgttcaagaacctgctgaaggagatcaggatctacgctcag
aagttcatcgaccgagggaaagacttcaacctggagctggccatcaaaacgcgcatcatc
tccgacggcctgaagtattcgctggccacggggaactggggcgacgtcaagaaagcccat
caggctcgagccggagtgtctcaggtgttgaacagactgacgttcgcctcaacgctttct
cacctccggcgcgtgaactctcccatcggccgagacggcaaactggcaaagccgaggcag
ctccataacaccctgtggggtatggtgtgtcccgccgagacgcccgagggccatgctgta
ggtctggtgaagaacttggcactgatggcgtacatctccgtcggttctcagccgtccccc
atcctggagttcttggaagagtggagcatggagaacctagaggagatctcacctgctgct
attgcagatgctacgaagatctttgtgaacggctgctgggtgggaatccacaaagaccct
gagcagctgatgaacactctgaggaagctcaggaggcagatggacatcattgtgtctgag
gtgtcgatgatccgcgatatccgagagcgagagatccggatttacacggacgccgggcgg
atctgtcgcccgctgctaatcgtggagaagcagaagctcctgctgaagagacgccacatc
gatcagctcaaagaacgagagtacaacaactacagctggcaggacctggtagcgagtggt
gtagtggagtacatcgatactctggaagaggagacagtgatgttggccatgaccccggat
gacctccaggagaagggtgtggcctactgctccacctacacacactgtgagatccatcca
tctatgatcctgggagtgtgtgcatccatcattcctttccctgatcacaatcagtctccc
aggaacacctaccagtctgctatggggaagcaggctatgggtgtgtacatcaccaacttc
cacgtgcgtatggacaccctggctcacgtgctgtattaccctcagaagcctctggtcact
acgcgctccatggagtacctgcgcttcagagagctgccagcaggcatcaattctatcgtg
gccatcgcatcatacacgggttacaatcaggaggactccgttatcatgaaccgttctgcc
gtggaccgaggcttcttcaggtcagtgttctaccgctcctataaagagcaggagtcaaag
aaaggcttcgaccaggaggagatttttgagaaaccgaagcgtgaagaatgtcaaggaatg
cgtcatgccatctacgataagctggacgatgacggtctgatagcgccgggcgtacgcgtg
tccggggaagacgtgattatcggaaagacggtcactctacccgaaaacgacgacgagcta
gacagcacgaaccggcgctacacgaagagagactgcagcacgttcctgcgcaccagcgaa
accggcatcgtcgaccaggtcatggtcacactcaaccaagagggctacaagttctgcaag
atccgggtgcgctcggttcgaatccctcagattggagacaagttcgccagtcgacacgga
cagaagggaacctgtgggattcagtacaggcaggaggacatgccattcacatgtgaagga
attaccccagacatcatcatcaacccccacgctatcccgtccagaatgacagtcggtcac
ttgatcgagtgtctgcaggggaaggtttctgcgaataaaggggagatcggtgacgccacg
ccattcaacgacgctgtgaatgtgcagaaagtgtccaacctgctgtctgaatacgggtac
cacctcagaggaaacgaggtgctgtataacggtttcacgggtcgtaagctgacctctcag
atcttcctcggccccacttactaccagcgtctcaaacacatggtggacgataagatccac
tcgagggcacgaggtcccgtccagatcctcaacaggcagcctatggagggcagatcacga
gacggaggtctgcgtttcggagagatggagcgagattgtcagatcgctcacggtgcagct
cagttcctgagggagcgactgttcgaggcgtcggatccctaccaggtgcacgtgtgtaac
ctgtgcggcctcatggccatcgccaacacgcgcacacacacctacgagtgcaggggctgc
cgcaacaagactcagatctcgctggtgcggctcccgtacgcctgcaagcttctcttccag
gagctcatgtctatgagcatcgccccacgcatgatgaccacctaa
DBGET
integrated database retrieval system
