Pangasianodon hypophthalmus (striped catfish): 113546980
Help
Entry
113546980 CDS
T05759
Symbol
ciita
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
phyp01001
]
113546980 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
phyp04054
]
113546980 (ciita)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
113546980 (ciita)
Protein kinases [BR:
phyp01001
]
Serine/threonine kinases: Other
TAF1 family
113546980 (ciita)
Pattern recognition receptors [BR:
phyp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
113546980 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
nSTAND3
AAA_22
LRR_8
AAA_25
AAA_16
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
113546980
NCBI-ProteinID:
XP_026802918
LinkDB
All DBs
Position
Unknown
AA seq
1057 aa
AA seq
DB search
MVLQNNMEPRSETEPEDIMTNLDHGETIPDRLLDLIVSTPLEEFEEFLNTSFSDEVWDDI
PDGSEDKSTLVCEVCDENSVARKRHTTKRRAGERSSKKTPRPKRSKRAHQSSETPPEVNM
AVQEGDFHVTGVSSLVRLPLTIATTASLMPPGAPAMQIIQTFNPLSPPVIKSILPVGHTY
VLVSPQSLAPVPVPQIAPLSPVDGTVAPLELSMSIHPVSSLSDSAYRGQSPSQLAPVSPS
KDKSPSKEYLPATQQIKKMPVLPKSVQDFIEQLKSHLRETCSMMQGGMSMESHYIDTPLV
QRKLIIRTGKNANKCLEKELVVLSDSERKKATMHRSHVFQNCGSNNKHLITVLGKAGMGK
STFIQRLALDWSTGGLQQFQFIFLLNCKVLNLTQASFSLKSLLFDSSTSPWCEDSEAIFK
HVLAFPENVLIVFDSFDDMKDLEGLLQSPATSATDGDYSIRQLFSGLFQKKILSGCTLLI
ATRPKDVLNQLLRKVDSILELCCFSPKDIEMYVSNYFGDVSEKEDALRKIKSQKYIFSLC
SNPLLCRLTCFLSAHQKNNGDTLPSTLTDLYQRVLSHYLEPNDNLQRSKQDIVQLCNLAW
DGYKTQNSLLNQNQNKNLVDYGLNSGILITHKRCEEPGNNQVTYFANLFMQNLLSALLLV
HSNELNDKTLVAQTALHQRKRKSQGEWQDVLQRFVMGLLFQKNTPPCCRVFQSNTDLQTK
RKAVEVHLENLKPGELVPSRLLELFHCVYEARNVKLAKLLVKNLPENLSFRGAQLSPVDV
YVVWHLLLRTKGHKRTFSIDLRDTSVPLSGLKELVALDCVASFRAPTMDTINLWEDLHRS
NDKLSLKNAIEKFTINPLKVSQVSDVENLVILVQIHNEKKLPLXVRHQQRFNDELGQQNS
PEVFLRLAEILPALQSLHHLDLENNKMGDAEAEQLAGVLSSLSSLKLLNLSQNCIGDGGV
RKLSQALTSASSLQSLSLYGNVIGDSGAESLASVLPLMTSLLDLDVKYNKFTDVGAKKLS
AALKNSPSVKSLQMWNDCIPYGVFDHLQIKDCRIKAL
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcagaataacatggagccgcgctctgaaacagaacctgaagacatcatgacc
aatctggatcacggggaaaccatacctgatcggctattggacctcatcgtctctactcca
cttgaagaatttgaagaatttctcaatacaagtttctcggatgaggtctgggacgatatc
ccagatggatcagaagataaatccacactggtatgcgaagtttgtgatgagaattcagtt
gctaggaaaaggcacaccactaagcgtcgagcaggtgaaagatcgtcaaaaaaaacacct
cgccctaaacgaagtaaaagagcacaccagagctctgaaacgccgcctgaagtcaacatg
gctgtgcaggaaggggatttccacgtcactggcgtgtcctcactcgtacgccttcccttg
acgatcgccaccaccgcctctctgatgccacctggtgcaccagccatgcagatcatacaa
acattcaatcctctctcccctccggtgattaaaagcattctaccagtaggacacacctac
gtgctggtttcaccgcagtctctagctcctgtcccagtgccacagattgcccctctttca
cctgtcgatggtacagtggctcctttagaactcagcatgtccattcatcccgtaagctcg
ttatcggacagcgcgtataggggtcagtctccatcccaactagctcctgtttcaccctct
aaagacaaatcaccctccaaagagtatcttcctgcaacccagcaaatcaagaagatgcca
gtgctaccaaagagtgttcaagacttcatcgagcaattgaagtcacacttaagagaaaca
tgcagtatgatgcaaggaggaatgagcatggagtctcactacatagacacaccactggta
cagaggaagctgataatcaggactggcaagaatgcaaataaatgcttagagaaggaactt
gtggtactcagtgactcagagcgaaaaaaggccacgatgcacaggagccatgttttccaa
aactgtggatccaataacaagcacctgatcaccgttcttgggaaagccggcatgggaaaa
agcacatttatccagcgtttggccttggactggtccaccggtggccttcagcagttccag
ttcatctttttgctgaattgcaaagttctaaatctgactcaggcgagcttcagtctgaag
agtttgctatttgactcatccacgtctccttggtgtgaggattcggaggccatcttcaaa
cacgttctcgcctttccagagaacgttctcattgtttttgacagttttgatgacatgaaa
gaccttgaaggtcttcttcaatcccccgctacctcagccacggatggtgactacagtatt
aggcagctattttctggtttgttccagaaaaagattctgtcagggtgcactcttttgatc
gccacccgacccaaagatgtcttgaatcagctactgcgtaaagtagacagtatcttggag
ttatgttgcttttctccaaaggacattgaaatgtacgtctcaaattattttggggatgtt
tcggagaaagaggatgcactaagaaaaatcaaaagccaaaaatacattttcagcttatgc
tcgaaccctttgctgtgtcgccttacatgctttttgtcagcgcatcaaaaaaacaatggt
gacacgttgccatcgactcttacggatttataccaaagagtgctcagccattatctagag
ccgaatgataaccttcagagatccaaacaggacattgtgcagctgtgtaacttggcttgg
gatggatataagactcaaaactcccttttaaaccaaaatcaaaacaaaaacctggtagac
tacggactcaactctgggatacttataacacataaacgatgtgaagaacctggcaacaac
caggtcacttattttgctaatctttttatgcagaaccttctaagtgccctgctattggtt
cattccaatgagctgaatgacaaaacgctggtggctcagactgcactccaccaacggaaa
aggaagtctcaaggagaatggcaagatgtgctacaaaggtttgtaatgggattactcttc
cagaaaaatacacccccttgttgtagggttttccaaagcaatactgacctacagaccaaa
agaaaagcagtggaagtccatctggagaatctgaaaccgggcgagctggttcccagcaga
ttacttgaactgtttcactgtgtgtacgaggctaggaatgtcaaacttgccaaacttctg
gtcaaaaatctacctgaaaatctgtcgtttcgtggagctcagctctcgccagttgacgtc
tatgttgtttggcatcttcttctgcgaaccaaaggacacaaacggactttttccattgac
ttgagggacacgtctgttcctctcagtggtctcaaagagctggttgcactggactgtgtg
gcatcattccgtgcgcctacaatggacaccattaacctttgggaggacctgcatcgcagc
aacgataaactgagtttgaaaaacgccattgaaaagtttactataaaccctctgaaggtg
tcgcaggtgtcggatgtggagaacttggtcattcttgtacaaatccacaatgagaagaag
ctgcccttantggtgagacatcagcaacgctttaatgatgagctcggtcagcagaacagc
cctgaggtgtttctccggctggcggagatcttacctgctcttcagtctctccatcacctg
gatctggagaataataaaatgggggatgcggaagctgaacagttggctggggttctgagc
tcgctgtcgtctctgaagctgctgaatctttctcagaactgcatcggagacggcggagtg
cggaaactgtcccaggccctgacgtccgcgtcctcgctgcagagcctcagtctgtatgga
aacgtgatcggggacagcggcgctgagagcttggcatcggttttaccgctcatgacgtct
ctgctggacctggatgtgaagtacaacaagttcacagacgtcggagccaaaaagctcagt
gctgcgttaaagaactcaccgagtgtgaagtctcttcaaatgtggaatgactgtattcct
tacggagtttttgatcatcttcagattaaagactgcaggataaaagctctataa
DBGET
integrated database retrieval system
