Pseudomonas inefficax: RIN61_12195
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Entry
RIN61_12195 CDS
T09811
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03030
DNA replication
pix03410
Base excision repair
pix03420
Nucleotide excision repair
pix03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIN61_12195 (polA)
03410 Base excision repair
RIN61_12195 (polA)
03420 Nucleotide excision repair
RIN61_12195 (polA)
03440 Homologous recombination
RIN61_12195 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pix03032
]
RIN61_12195 (polA)
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_12195 (polA)
Enzymes [BR:
pix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RIN61_12195 (polA)
DNA replication proteins [BR:
pix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIN61_12195 (polA)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RIN61_12195 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIN61_12195 (polA)
BRITE hierarchy
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WNN42033
LinkDB
All DBs
Position
2712310..2715057
Genome browser
AA seq
915 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR
SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDA
AFLSYELATIKVDVPLDIEVDALVCGEPDREALLALYTEMEFKSWVAEVQRDAAKAGDDI
APIVEQAAKAEPRYETILDQDRLDFWLEKLRQAPLFAFDTETTSLDAQQAQLVGVSFAVE
PHEAAYVPLAHDYEGAPVQLDRAAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAIE
MRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQIHLDKA
GPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAALLKV
QSGELGVKMAELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTTKGQPSTAEAVL
DELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPIRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDV
HRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFA
RYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAA
DIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRLHMSKAAQLDVP
LLVEAGIGANWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctgtaccgcgcctttcac
gcgctgccgccgctgaccacctccaagggcatgccgaccggcgcggtgaagggggtgctg
aacatgctcaagagcctgcgcaagcaataccccgacagcctgttcgcggtggtgttcgac
gccaagggcggtaccttccgcgatgccatgttcgccgaatacaaggccaaccgcccgagc
atgccggacgacctgcgggtacagatcgagccgctgcatgccagcgtcaaggcgctgggc
tacccgctgctgtgcgtggaaggggtcgaggctgatgacgtgatcggcaccctggcgcgc
agcagtgcagccctgggccggccggtaatcatctcgaccggtgacaaggacatggcgcag
ttggtggacgggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtagct
ggcgtgcacgagaaatttggcgtcggcccggaacacatcatcgatttcctggccctgatg
ggcgacaaggtcgacaacattcccggcgtgccaggtgtgggcgaaaaaaccgcagtgggc
ttgctgaccggcatcggcggtggcctcagcgacttgtacgccaacctggacaaggtcccg
gcgctggccattcgcggcgccaagaccctgccggccaagctggaagagcaccgcgacgcc
gcgttcctgtcttatgagctggctaccatcaaggtcgatgtgcccctggatatcgaagta
gatgccctggtgtgcggcgagccggaccgtgaagcgttgctggcgctgtacaccgagatg
gagttcaagagctgggtcgccgaggtgcagcgtgacgcggccaaggccggtgacgacatc
gcgccgatcgtggagcaagcggccaaggccgagcccaggtatgaaaccatcctcgaccag
gaccgtctcgacttctggctggagaagctgcgccaggcgccactgttcgccttcgacacc
gaaaccaccagcctggacgcccagcaggcgcaactggttggtgtgtcgttcgctgtcgag
ccgcatgaagcggcctatgtgccgctggcccatgactatgagggggcgccggttcagctg
gaccgcgcagccgtactactggcgctgaagccgctgctggaagacccggccaaggccaag
gtcgggcagaacgccaagtacgatatcaacatcctcgccaacggctcacccgccatcgaa
atgcgcggcgtggcctatgacaccatgctcgagtcgtacgtgctgaactctaccgccacc
cgtcacgacatggacagcctggcgcagaagtacctcgaccacaccaccatcgccttcgag
gacatcgccggcaagggcgccaagcaactgaccttcaaccagatccacctggacaaggcc
ggcccctacgccgccgaagacgccgacatcaccctgcgcctgcatcacgcgctgcaggca
cgcctggcgcagacaccgagcgtgcagccggtactgatggacatcgagatgccgctggtg
ccggtgctggccaggatcgagcgccagggtgcgctggtcgatgccgcgctgctgaaggtg
cagagcggtgagctgggggtgaagatggctgagctggagcagcgcgcctatgagctggcc
ggtgaggagttcaacctcggctcgcccaagcagctgggtgcgattctctacgacaaactg
ggcatgccggtgctgagcaagaccaccaagggccagccatccacggcagaagcagtgctc
gatgagctggccgagcaaggctacccgctgcctgaggtactgatgcagtaccgcagcctg
agcaagctcaagagcacctacaccgacaagctgccggggcagatcaacccgcgcaccggg
cgtatccacacctcctaccagcaggcggttgcggccaccggccggctttcgtccagcgac
cctaacctgcagaacatccctatccgtactgccgaaggccggcgcatccgccaggccttc
gtcgccagcccgggctacaagctgctggcggcggactactcgcagatcgagttgcgcatc
atggcccacctggccaaggacgaaggcttgctgcatgccttccgtaacgacctggatgtg
caccgcgccacggccgcggaggtattcggcgtagctctggaagacgtcaccaccgaccag
cgtcgcagtgccaaggccatcaacttcggcctgatctacggcatgagcgcctttggcctg
gccaagcagatcggtgtcgaccgcaaacagtcgcaggattacattgaccgctactttgcc
cgttacccgggcgtgctggcctatatggagcgcacccgtgcccaggctgcggagcaaggc
tttgttgaaaccttgttcggccgccgcttgtacctgcctgacatcaatgccaagaacccg
gctctgcgcaaaggcgccgaacgcacggcgatcaacgcccccatgcagggcactgcggcc
gacatcatcaagcgggccatggtcaatgtggataactggctgagcgagagcgggctggat
gcccgggtgatcctgcaggtacacgacgaactggtacttgaagtgcgcgaggacctggtt
gagcaggttaaagatgaaattcgcctgcacatgagcaaggccgcgcaactggatgtgccg
ctgctggtcgaggcaggaattggtgcgaattgggacgaagctcactga
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