Pseudomonas inefficax: RIN61_19835
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Entry
RIN61_19835 CDS
T09811
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pix
Pseudomonas inefficax
Pathway
pix00071
Fatty acid degradation
pix00280
Valine, leucine and isoleucine degradation
pix00310
Lysine degradation
pix00362
Benzoate degradation
pix00380
Tryptophan metabolism
pix00410
beta-Alanine metabolism
pix00640
Propanoate metabolism
pix00650
Butanoate metabolism
pix00907
Pinene, camphor and geraniol degradation
pix00930
Caprolactam degradation
pix01100
Metabolic pathways
pix01110
Biosynthesis of secondary metabolites
pix01120
Microbial metabolism in diverse environments
pix01200
Carbon metabolism
pix01212
Fatty acid metabolism
Module
pix_M00087
beta-Oxidation
pix_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RIN61_19835 (fadB)
00650 Butanoate metabolism
RIN61_19835 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
RIN61_19835 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RIN61_19835 (fadB)
00310 Lysine degradation
RIN61_19835 (fadB)
00380 Tryptophan metabolism
RIN61_19835 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RIN61_19835 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
RIN61_19835 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RIN61_19835 (fadB)
00930 Caprolactam degradation
RIN61_19835 (fadB)
Enzymes [BR:
pix01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
RIN61_19835 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
RIN61_19835 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
RIN61_19835 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
RIN61_19835 (fadB)
BRITE hierarchy
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
SDH_sah
Motif
Other DBs
NCBI-ProteinID:
WNN38430
LinkDB
All DBs
Position
4391720..4393867
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIQADASVKGVIVSS
GKDVFIVGADITEFVDNFKLPEAELVAGNLEANRIFNAFEDLEVPTVAAINGIALGGGLE
MCLAADYRVMSTSAKIGLPEVKLGIYPGFGGTVRLPRLIGSDNAIEWIAAGKENRAEDAL
KVGAVDAVVAPDLLMAGALDLVKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANLGRDKALEVEAAGFAKLAKTSVAQSLIGLFLNDQEL
KRKAKAHDEIAHDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGNRVEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEGQVK
DDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP
KKVADASVLDVLKPIVFEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGPLYHPTAKLREMAKNGQRFFN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgagctc
aagttcgacctcaagggtgagtccgtcaacaagttcaaccgcctgaccctgaacgaactg
cgccaggccgtcgatgccattcaggccgacgcctcggtcaagggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgagttcgtcgacaacttcaagctg
cccgaggccgaactggtcgccggcaacctggaagccaatcgcatcttcaacgccttcgaa
gacctcgaagtgccgaccgtcgcagccatcaacggtatcgccctgggcggcggcctggaa
atgtgcctggccgccgactaccgggtcatgtccaccagcgccaagatcggcctgccggaa
gtcaagctgggtatctacccgggcttcggcggtaccgtgcgcctgccgcgcctgatcggt
tcggacaacgctatcgagtggatcgccgccgggaaggaaaaccgtgccgaagacgccctg
aaagtaggtgccgtcgacgccgtggttgcgcctgacctgttgatggctggcgccctcgac
ctggtcaagcgcgccatcagtggcgagctggactacaaggccaagcgccagcccaagctg
gaaaagctcaagctcaacgccatcgagcagatgatggccttcgagaccgccaagggcttc
gtcgccggccaggccggcccgaactacccggccccggtcgaagccatcaagaccattcag
aaggccgccaacctcggccgtgacaaggccctggaagtcgaagccgcaggcttcgccaag
ctggccaagacctcggttgcccagagcctgatcggcctgttcctcaacgaccaggaactc
aagcgcaaggccaaggcacatgacgaaatcgcccacgatgtgaagcaggccgccgtgctc
ggcgccggcatcatggggggcggcatcgcctaccagtcggcggtaaagggcaccccgatc
ctgatgaaggacatccgcgaggaagccatccagctgggcctgaacgaggcctccaagctg
ctcggcaaccgcgtcgagaagggccgcctgaccccggccaagatggccgaggcactcaac
gccattcgcccaaccctgtcctatggcgatttcgccaatgtcgacatcgtcgtcgaagcc
gttgtcgagaacccgaaggtcaagcaggccgtgctggccgaagtggaaggccaggtgaag
gacgatgcgatcctcgcctccaacacctcgaccatctccatcaacctgctggccaaggcg
ctcaagcgcccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtcatccgtggcgagaagtccagtgaagtggcggtcgccaccaccgtggcc
tacgccaagaagatgggcaagaacccgatcgtggtcaacgactgcccgggcttcctggtc
aaccgtgtgctgttcccgtacttcggcggcttcgccaagctggtaagcgccggtgtcgac
ttcgtgcgaatcgacaaggtcatggagaaattcggttggccgatgggcccggcgtacctg
atggacgtagtcggcatcgacaccggccaccacggccgcgacgtgatggccgaaggcttc
ccggaccgcatgaaagacgagcgccgctcggccgttgacgcactgtacgaggccaaccgc
ctgggccagaagaacggcaagggcttctacgcctacgaaaccgacaagcgcggcaaaccg
aagaaggtcgccgacgccagcgtgctcgacgtgctcaagccgatcgttttcgagcagcgt
gaagtcaccgacgaagacatcatcaactggatgatgatcccgctgtgcctggagaccgtg
cgctgtctggaagacggcatcgtagaaaccgccgccgaagccgacatgggtctggtctac
ggcattggcttccctcccttccgcggtggtgcgctgcgctatatcgactcgatcggtgtg
gccgaattcgttgccctggccgatcagtacgccgacctggggccgctgtaccacccgacc
gccaagctgcgtgaaatggccaagaacggccagcgcttcttcaactga
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