Pseudomonas izuensis: LAB08_R11380
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Entry
LAB08_R11380 CDS
T08555
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
piz
Pseudomonas izuensis
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
piz03009
]
LAB08_R11380 (rimO)
Enzymes [BR:
piz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LAB08_R11380 (rimO)
Ribosome biogenesis [BR:
piz03009
]
Prokaryotic type
ribosomal protein modification factors
LAB08_R11380 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BCX66522
LinkDB
All DBs
Position
complement(1275640..1276977)
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AA seq
445 aa
AA seq
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MSTTSAPANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVLAVTGPQQYEQVVNAVHEVVP
PRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE
AQRLVKSGVKELLVISQDTSAYGVDVKYRTGFWNGAPVKTRMTELCEALSTLGVWVRLHY
VYPYPHVDELIPLMAAGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKNWREICPD
LIIRSTFIVGFPGETEEDFQYLLNWLTEAQLDRVGCFQYSPVEGAPANDLDLEVVPDDVK
QDRWERFMAHQQAISSARLQMRIGREIEVLVDEVDEQGAVGRCFFDAPEIDGNVFIDNGS
NLKPGDKVWCKVTDADEYDLWAEQI
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacttctgcgccggccaatccaaaggttggcttcgtatccctgggttgcccg
aaagcactggtcgactccgagcgcatcctcacccagctgcgcatggaaggctatgacgtc
gtgtccacctatcaggacgccgatgtcgtggtggtgaacacctgcggcttcatcgattcg
gccaaggcagaatccctggaagtgatcggcgaagcgatcaaggaaaacggcaaggtcatc
gtgaccggctgcatgggcgtcgaagaaggcaacatccgcaacgtacacccgagcgtgctg
gccgttaccggtccgcagcagtacgagcaagtggtcaacgccgtgcacgaagtcgtgccg
ccgcgtcaggatcacaacccgctgatcgacctggtgccgccacaagggatcaaactgacc
ccgcgccactatgcctacctgaagatttccgagggctgcaaccacagctgcagcttctgc
atcatcccttcgatgcgcggcaaactggtcagccgtccggtgggtgatgtgctcgacgag
gcccagcgcctggtcaaatccggcgtcaaggagctgctggtaatctcccaggacaccagc
gcctacggtgtcgacgtgaaataccgcaccggcttctggaacggcgcgccggtgaaaacc
cgcatgaccgaactctgtgaagccctgagcaccctcggtgtctgggtccgcctgcactac
gtttacccgtacccgcacgtcgacgagctgatcccgctgatggccgccggcaagatcctg
ccgtacctggacatcccgttccagcacgccagcccgaaagtgctgaagtcgatgaaacgc
ccggcattcgaagacaagaccctggcgcgcatcaagaactggcgcgagatctgcccggac
ctgatcatccgttcgaccttcatcgtcggtttccccggcgaaaccgaagaagacttccaa
tacctgctgaactggctgaccgaagcccagctcgaccgcgtcggctgcttccagtactca
cctgtcgaaggcgccccggccaacgacctcgatctggaagttgtgcccgatgacgtcaag
caggaccgctgggagcgtttcatggcgcaccagcaggccatcagctcggcgcgcctgcaa
atgcgcattggccgtgaaatcgaagtgctggtcgatgaagtcgacgagcaaggcgcggtc
ggccgctgcttcttcgatgccccggaaatcgacggtaacgtgttcatcgacaacggcagc
aacctcaagccgggcgacaaggtctggtgcaaagtgactgacgccgacgagtacgacctc
tgggccgagcagatctaa
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