Pantoea jilinensis: KTJ90_09110
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Entry
KTJ90_09110 CDS
T08640
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pji
Pantoea jilinensis
Pathway
pji02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KTJ90_09110 (pdeR)
Enzymes [BR:
pji01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
KTJ90_09110 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_10
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QXG56259
LinkDB
All DBs
Position
complement(1939309..1941294)
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AA seq
661 aa
AA seq
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MTDEQGQTLLYTLFGTTSPHWRLTADSDALHFAEDESSQTNIALPLTPGQAAMIRAMPVI
TSSINLTMSLQGIDVPMHFVGRKVNQASWAGTASAWGDTSAVARDLTLGLSFAEQVVSEA
NSVIVILDQRGNIQRFNRLSEEYTGLNEHEVIGRNVFQLFMTRQEASQSRRNIAGFFRDG
NSYEVERWVKTKKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVLANTD
TVTGLPNRNAIHQQISLALERAGHDETGVVYLDLDNFKKVNDAYGHMFGDQLLQAVSLAI
LSCLGKDQTLGRLGGDEFVVLAEHTSQAALEAMSSRILERLRQPFRIGLIEVYSGCSIGI
AFAPLHGEDRESLIRNADTAMYHAKENGRGKFCVFAAEMNQRVFEYLWLDTNLRKALELD
HLLVHYQPKIDSDGQVRSAEALVRWNSPERGMVSPADFIPYAEESGLIVPLGRWVMLNVL
QQIIVWRQQGIFLRVAVNVSARQLLDQSIYTDLKQALHEANITDCPIDIELTESCLIENE
TEALKLMKQFQELGAQVHLDDFGTGYSSLSQLARVPINAIKLDQSFIRDINKQPVSQSLV
RAIVAVAKALDLQVIAEGIETPDEEKFVLKSGVDGRQGYYYAKPMPAEQFGHWLAKHPAR
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgaacaagggcaaacgttgttgtacaccctttttggtacaaccagccctcat
tggcgtctgaccgcggacagcgatgcattgcattttgccgaagatgagtcgtcacaaact
aatatcgccctgccgctgacacccggccaggctgcaatgatccgcgcaatgcccgtcatt
acttcaagtatcaatctgaccatgtccctgcaaggcattgatgtgccaatgcattttgtc
ggacgtaaagtgaaccaggcctcctgggccggaaccgcttctgcctggggagatacgtct
gcggtcgcccgtgacctgaccctgggcctttcattcgccgaacaagtggtttctgaagct
aattcagtgattgttatcctcgatcagcggggcaatattcagcgttttaaccgcctgagt
gaagaatataccggtctgaatgaacatgaagttataggtcgaaatgtctttcagttgttt
atgacccggcaggaagcctcacagtcgcggcgcaacattgcaggcttcttccgtgacggt
aactcgtacgaggtggagcgctgggtcaaaaccaaaaagggccagcgactgtttctgttt
cgtaataagtttgttcacagcggcagcggcaaaaatgaaattttcctcatctgttctggt
acagacattaccgaggagcgacgtgcccaggaacgcctccgggtgctggcaaacaccgat
acggtcaccggtttacctaatcgcaacgccattcatcagcagattagcctggcgctggag
cgcgccgggcatgatgagaccggtgtcgtctatctcgatctcgataatttcaaaaaagtg
aacgacgcctacggtcatatgttcggcgatcaattactgcaggcagtctctctcgcgatt
cttagctgtctgggtaaggaccagacgctgggtcgtctgggtggcgatgagtttgtggtg
ctggctgaacacaccagccaggctgcgctggaggcgatgtcctcccgcattcttgagcgc
ctgcgacagcctttccgtatcggactgattgaagtttacagtggctgttccatcggtatc
gctttcgcaccgctgcatggcgaagatagagagagcctgattcgtaacgcggacaccgcg
atgtatcacgctaaagagaatggtcgcggcaagttctgtgtctttgccgccgagatgaac
cagcgggtctttgagtatctgtggctggacaccaacctgcgcaaggcgcttgaactcgat
catctgctggtacattaccagcccaaaattgatagcgatggacaggttcgcagcgccgag
gcattagtacgctggaactcaccagagcgaggtatggtttcgcccgcagattttattccc
tatgccgaagagtcggggctgattgtgccgctgggacgctgggtaatgctcaacgtgctt
cagcagattatcgtctggcgtcagcagggcattttcctgcgcgtcgctgtcaatgtgtct
gcccgtcagttgctcgaccaaagtatctacaccgatctgaaacaggcactgcatgaggcg
aatatcactgattgtccgattgatattgagctcacagaaagttgtctgattgagaatgaa
actgaagcgctgaagctgatgaaacagtttcaggagctgggcgcacaggttcatctggat
gattttggcaccggttactcttcgctttctcagctcgcacgtgtgccgatcaatgcgatt
aagctcgatcaaagctttatccgcgacatcaataaacagccggtatcacaatcgctggtg
cgtgcaatcgtcgccgtcgctaaggcgcttgatttgcaggtgattgcagaaggtattgag
acgccggatgaagagaagttcgtgcttaaaagtggtgttgatgggcgtcagggttactat
tacgcaaaaccaatgcccgcagaacaatttgggcattggctggctaagcatcctgcccgc
gtttaa
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